List of works - Simon Creer

Environmental DNA for wildlife biology and biodiversity monitoring

scientific article

Sequencing our way towards understanding global eukaryotic biodiversity

scientific article (publication date: April 2012)

Second-generation environmental sequencing unmasks marine metazoan biodiversity

scientific article

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

scientific article (publication date: 29 November 2016)

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities.

scientific article published on 16 September 2017

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

scientific article

Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca).

scientific article

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

scientific article

Competition and phylogeny determine community structure in Müllerian co-mimics

scientific article published in January 2011

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems

scientific article

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

article

Using DNA metabarcoding to investigate honey bee foraging reveals limited flower use despite high floral availability.

scientific article published on 16 February 2017

Genetic and ecological correlates of intraspecific variation in pitviper venom composition detected using matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS) and isoelectric focusing

scientific article

The ecologist's field guide to sequence-based identification of biodiversity

scientific article published in 2016

Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus.

scientific article

Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the asian pit viper genus, Trimeresurus: separate, simultaneous, and conditional data combination analyses

scientific article

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

article

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists

scientific article

SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing

scientific article

Optimal Intron Analyses in the Trimeresurus Radiation of Asian Pitvipers

article

How quantitative is metabarcoding: a meta-analytical approach

scientific article published on 07 December 2018

A common garden design reveals population-specific variability in potential impacts of hybridization between populations of farmed and wild Atlantic salmon, Salmo salar L.

scientific article published on 27 January 2016

Inclusion of nuclear intron sequence data helps to identify the Asian sister group of New World pitvipers

scientific article

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

scientific article published on 29 April 2019

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples

scientific article published on 18 April 2018

Cosmopolitanism of microbial eukaryotes in the global deep seas.

scientific article

Development and application of microsatellites in Carcinus maenas: genetic differentiation between Northern and Central Portuguese populations

scientific article

Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach

scientific article

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes

scientific article published in February 2018

Can long-range PCR be used to amplify genetically divergent mitochondrial genomes for comparative phylogenetics? A case study within spiders (Arthropoda: Araneae)

scientific article (publication date: 2013)

Targeting optimal introns for phylogenetic analyses in non-model taxa: experimental results in Asian pitvipers

article

Experimental harvesting of fish populations drives genetically based shifts in body size and maturation

scientific article published in 2013

Choosing and using introns in molecular phylogenetics.

scientific article published on 14 June 2007

Plasticity in growth of farmed and wild Atlantic salmon: is the increased growth rate of farmed salmon caused by evolutionary adaptations to the commercial diet?

scientific article

Offshore insular variation in the diet of the Taiwanese bamboo viper Trimeresurus stejnegeri (Schmidt).

scientific article published in August 2002

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing

scientific article published in Scientific Reports

Does density influence relative growth performance of farm, wild and F1 hybrid Atlantic salmon in semi-natural and hatchery common garden conditions?

scientific article

Multigene molecular systematics confirm species status of morphologically convergent Pagurus hermit crabs

scientific article (publication date: 2011)

Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

scientific article published on 09 August 2019

Plastic and heritable components of phenotypic variation in Nucella lapillus: an assessment using reciprocal transplant and common garden experiments

scientific article

Tideless estuaries in brackish seas as possible freshwater-marine transition zones for bacteria: the case study of the Vistula river estuary

scientific article published on 9 December 2016

Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea.

scientific article published on 29 November 2017

Convergence of multiple markers and analysis methods defines the genetic distinctiveness of cryptic pitvipers

scientific article published on 8 July 2015

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

scientific article published on 07 March 2019

Marine ecology: Genetics from a drop in the ocean

scientific article published on 04 January 2017

The importance of being genomic: Non-coding and coding sequences suggest different models of toxin multi-gene family evolution

scientific article published on 7 September 2015

Investigating the molecular systematic relationships amongst selectedPlesionika(Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea

scientific article published in 2012

Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates

scientific article published on 13 April 2019

Salinity drives meiofaunal community structure dynamics across the Baltic ecosystem

scientific article published on 01 August 2019

List of works by Simon Creer

Environmental DNA for wildlife biology and biodiversity monitoring

Sequencing our way towards understanding global eukaryotic biodiversity

Second-generation environmental sequencing unmasks marine metazoan biodiversity

DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities.

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca).

Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity

Competition and phylogeny determine community structure in Müllerian co-mimics

Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes

Using DNA metabarcoding to investigate honey bee foraging reveals limited flower use despite high floral availability.

Genetic and ecological correlates of intraspecific variation in pitviper venom composition detected using matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS) and isoelectric focusing

The ecologist's field guide to sequence-based identification of biodiversity

Transcriptomics and in vivo tests reveal novel mechanisms underlying endocrine disruption in an ecological sentinel, Nucella lapillus.

Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the asian pit viper genus, Trimeresurus: separate, simultaneous, and conditional data combination analyses

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists

SNP discovery in European anchovy (Engraulis encrasicolus, L) by high-throughput transcriptome and genome sequencing

Optimal Intron Analyses in the Trimeresurus Radiation of Asian Pitvipers

How quantitative is metabarcoding: a meta-analytical approach

A common garden design reveals population-specific variability in potential impacts of hybridization between populations of farmed and wild Atlantic salmon, Salmo salar L.

Inclusion of nuclear intron sequence data helps to identify the Asian sister group of New World pitvipers

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples

Cosmopolitanism of microbial eukaryotes in the global deep seas.

Development and application of microsatellites in Carcinus maenas: genetic differentiation between Northern and Central Portuguese populations

Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes

Can long-range PCR be used to amplify genetically divergent mitochondrial genomes for comparative phylogenetics? A case study within spiders (Arthropoda: Araneae)

Targeting optimal introns for phylogenetic analyses in non-model taxa: experimental results in Asian pitvipers

Experimental harvesting of fish populations drives genetically based shifts in body size and maturation

Choosing and using introns in molecular phylogenetics.

Plasticity in growth of farmed and wild Atlantic salmon: is the increased growth rate of farmed salmon caused by evolutionary adaptations to the commercial diet?

Offshore insular variation in the diet of the Taiwanese bamboo viper Trimeresurus stejnegeri (Schmidt).

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing

Does density influence relative growth performance of farm, wild and F1 hybrid Atlantic salmon in semi-natural and hatchery common garden conditions?

Multigene molecular systematics confirm species status of morphologically convergent Pagurus hermit crabs

Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

Plastic and heritable components of phenotypic variation in Nucella lapillus: an assessment using reciprocal transplant and common garden experiments

Tideless estuaries in brackish seas as possible freshwater-marine transition zones for bacteria: the case study of the Vistula river estuary

Jellyfish on the menu: mtDNA assay reveals scyphozoan predation in the Irish Sea.

Convergence of multiple markers and analysis methods defines the genetic distinctiveness of cryptic pitvipers

Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems

Marine ecology: Genetics from a drop in the ocean

The importance of being genomic: Non-coding and coding sequences suggest different models of toxin multi-gene family evolution

Investigating the molecular systematic relationships amongst selectedPlesionika(Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea

Deep segregation in the open ocean: Macaronesia as an evolutionary hotspot for low dispersal marine invertebrates

Salinity drives meiofaunal community structure dynamics across the Baltic ecosystem