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List of works by Matthew The

A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms

scientific article published on 16 April 2018

A protein standard that emulates homology for the characterization of protein inference algorithms

scholarly article published 19 December 2017

ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data.

scientific article

Decrypting drug actions and protein modifications by dose- and time-resolved proteomics

scientific article published on 16 March 2023

Focus on the spectra that matter by clustering of quantification data in shotgun proteomics

How to talk about protein-level false discovery rates in shotgun proteomics

scientific article published on 9 August 2016

Integrated Identification and Quantification Error Probabilities for Shotgun Proteomics

scholarly article by Matthew The & Lukas Käll published March 2019 in Molecular & Cellular Proteomics

Integrated identification and quantification error probabilities for shotgun proteomics

MaRaCluster: A Fragment Rarity Metric for Clustering Fragment Spectra in Shotgun Proteomics

scientific article published on 14 December 2015

Response to “Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra”

scholarly article by Johannes Griss et al published 23 April 2018 in Journal of Proteome Research

SIMSI-Transfer: Software-assisted reduction of missing values in phosphoproteomic and proteomic isobaric labeling data using tandem mass spectrum clustering

scientific article published on 22 April 2022

Uncertainty estimation of predictions of peptides' chromatographic retention times in shotgun proteomics.

scientific article published on 22 October 2016

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