List of works - David Juan

A global catalog of whole-genome diversity from 233 primate species

Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories

scientific article

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

scientific article published in September 2005

Automatic identification of informative regions with epigenomic changes associated to hematopoiesis

Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.

scientific article published on September 2017

Co-evolution and co-adaptation in protein networks

scientific article published on 20 February 2008

Comprehensive identification of somatic nucleotide variants in human brain tissue

scientific article

Comprehensive identification of somatic nucleotide variants in human brain tissue

Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone

scientific article published on 13 December 2016

Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta)

scientific article published on 11 May 2020

Copy number variation underlies complex phenotypes in domestic dog breeds and other canids

scientific article

Correction: Telford et al. Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches. 2020, , 1686

scientific article

Current advances in primate genomics: novel approaches for understanding evolution and disease

scientific article published in 2023

Detection of significant protein coevolution

scientific article

EcID. A database for the inference of functional interactions in E. coli

scientific article

Enhancing the prediction of protein pairings between interacting families using orthology information

scientific article

Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs

scientific article

Epigenomic profiling of primate LCLs reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures

Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures

scientific article

Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches

scientific article published on 29 October 2020

Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations

scientific article published on 19 May 2020

Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types

scientific article published on 26 January 2017

High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

scholarly article

Identification of amino acid residues crucial for chemokine receptor dimerization.

scientific article published on 11 January 2004

Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions

scientific article published on 26 October 2012

Inference of functional relations in predicted protein networks with a machine learning approach

scientific article

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

scientific article

Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

scientific article published on 05 June 2020

Intronic CNVs and gene expression variation in human populations

article

Intronic CNVs cause gene expression variation in human population

article

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures

scientific article

Late-replicating CNVs as a source of new genes

scientific article published on 15 December 2013

Loose ends: almost one in five human genes still have unresolved coding status

scientific article published on 01 August 2018

Loose ends: almost one in five human genes still have unresolved coding status

scientific article published on 01 December 2018

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes

scientific article (publication date: 15 November 2014)

Mutation distribution density in tumors reconstructs human’s lost diversity

Prediction of protein interaction based on similarity of phylogenetic trees

scientific article published in January 2008

Protein interactions and ligand binding: from protein subfamilies to functional specificity

scientific article

Selection of organisms for the co-evolution-based study of protein interactions

scientific article

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

scientific article published in Nature Communications

Somatic mutations in Parkinson disease are enriched in synaptic and neuronal processes

Spatiotemporal transcriptomic divergence across human and macaque brain development

scientific article

Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b

scientific article published on 2 May 2013

TSEMA: interactive prediction of protein pairings between interacting families

scientific article

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

scientific article

The landscape of tolerated genetic variation in humans and primates

Transcriptional dissection of pancreatic tumors engrafted in mice.

scientific article

Unveiling the molecular basis of disease co-occurrence: towards personalized comorbidity profiles

Variation in predicted COVID-19 risk among lemurs and lorises

scholarly article by Christian Roos published in 2021

Variation in predicted COVID-19 risk among lemurs and lorises

scholarly article by Lukas Kuderna published in 2021

List of works by David Juan

A global catalog of whole-genome diversity from 233 primate species

Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories

Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome.

Automatic identification of informative regions with epigenomic changes associated to hematopoiesis

Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.

Co-evolution and co-adaptation in protein networks

Comprehensive identification of somatic nucleotide variants in human brain tissue

Comprehensive identification of somatic nucleotide variants in human brain tissue

Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone

Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta)

Copy number variation underlies complex phenotypes in domestic dog breeds and other canids

Correction: Telford et al. Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches. 2020, , 1686

Current advances in primate genomics: novel approaches for understanding evolution and disease

Detection of significant protein coevolution

EcID. A database for the inference of functional interactions in E. coli

Enhancing the prediction of protein pairings between interacting families using orthology information

Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs

Epigenomic profiling of primate LCLs reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures

Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures

Expanding the Geographic Characterisation of Epstein-Barr Virus Variation through Gene-Based Approaches

Extreme differences between human germline and tumor mutation densities are driven by ancestral human-specific deviations

Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types

High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

Identification of amino acid residues crucial for chemokine receptor dimerization.

Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions

Inference of functional relations in predicted protein networks with a machine learning approach

Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity

Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

Intronic CNVs and gene expression variation in human populations

Intronic CNVs cause gene expression variation in human population

JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures

Late-replicating CNVs as a source of new genes

Loose ends: almost one in five human genes still have unresolved coding status

Loose ends: almost one in five human genes still have unresolved coding status

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes

Mutation distribution density in tumors reconstructs human’s lost diversity

Prediction of protein interaction based on similarity of phylogenetic trees

Protein interactions and ligand binding: from protein subfamilies to functional specificity

Selection of organisms for the co-evolution-based study of protein interactions

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

Somatic mutations in Parkinson disease are enriched in synaptic and neuronal processes

Spatiotemporal transcriptomic divergence across human and macaque brain development

Subfunctionalization via adaptive evolution influenced by genomic context: the case of histone chaperones ASF1a and ASF1b

TSEMA: interactive prediction of protein pairings between interacting families

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

The landscape of tolerated genetic variation in humans and primates

Transcriptional dissection of pancreatic tumors engrafted in mice.

Unveiling the molecular basis of disease co-occurrence: towards personalized comorbidity profiles

Variation in predicted COVID-19 risk among lemurs and lorises

Variation in predicted COVID-19 risk among lemurs and lorises