List of works - Fiona Brinkman

Aminoglycoside efflux in Pseudomonas aeruginosa: involvement of novel outer membrane proteins.

scientific article

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria.

scientific article

Avian beta-defensin nomenclature: a community proposed update

scientific article published on 23 April 2007

Bacterial cyclic diguanylate signaling networks sense temperature

scientific article published on 31 March 2021

Baseline Practices for the Application of Genomic Data Supporting Regulatory Food Safety

scientific article

Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide.

scientific article published on 30 August 2006

Characterization of Legionella Species from Watersheds in British Columbia, Canada

scientific article published on July 2017

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

scientific article

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

scientific article published on 21 February 2008

Detecting genomic islands using bioinformatics approaches

scientific article

Disruption of the Gut Microbiota With Antibiotics Exacerbates Acute Vascular Rejection.

scientific article published on 10 March 2018

Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks

scientific article published in 2022

Erratum: Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

article

Evaluation of genomic island predictors using a comparative genomics approach

scientific article

Evolutionary relationships among virulence-associated histidine kinases

scientific journal article

Function of pseudomonas porins in uptake and efflux.

scientific article

G-protein-coupled receptor independent, immunomodulatory properties of chemokine CXCL9.

scientific article

Genetic and molecular analysis of GogB, a phage-encoded type III-secreted substrate in Salmonella enterica serovar typhimurium with autonomous expression from its associated phage.

scientific article published in May 2005

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress

scientific article published on 08 March 2017

Identification of 526 conserved metazoan genetic innovations exposes a new role for cofactor E-like in neuronal microtubule homeostasis

scientific article

Identification of oprG, a gene encoding a major outer membrane protein of Pseudomonas aeruginosa

scientific article published on 01 April 1999

Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system.

scientific article

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

scientific article

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

scientific article

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

scientific article published on 2 May 2017

IslandViewer update: Improved genomic island discovery and visualization.

scientific article published on 15 May 2013

MicrobeDB: a locally maintainable database of microbial genomic sequences.

scientific article

Mining the Pseudomonas genome.

scientific article

Molecular analyses of disease pathogenesis: application of bovine microarrays.

scientific article

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa ⬇️

scientific journal article

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.

scientific article

PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea ⬇️

scientific article published on November 10, 2010

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures

scientific article

Population genomics: modeling the new and a renaissance of the old

scientific article published on 14 October 2008

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

scientific article published on 8 June 2017

The Amino Terminus of Outer Membrane Protein OprF Forms Channels in Lipid Bilayer Membranes: Correlation with a Three-Dimensional Model

scientific article published in 2000

The OxyR-regulated phnW gene encoding 2-aminoethylphosphonate:pyruvate aminotransferase helps protect Pseudomonas aeruginosa from tert-butyl hydroperoxide

scientific article published on 7 December 2017

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak

scientific article (publication date: 24 February 2011)

List of works by Fiona Brinkman

Aminoglycoside efflux in Pseudomonas aeruginosa: involvement of novel outer membrane proteins.

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria.

Avian beta-defensin nomenclature: a community proposed update

Bacterial cyclic diguanylate signaling networks sense temperature

Baseline Practices for the Application of Genomic Data Supporting Regulatory Food Safety

Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide.

Characterization of Legionella Species from Watersheds in British Columbia, Canada

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

Detecting genomic islands using bioinformatics approaches

Disruption of the Gut Microbiota With Antibiotics Exacerbates Acute Vascular Rejection.

Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks

Erratum: Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

Evaluation of genomic island predictors using a comparative genomics approach

Evolutionary relationships among virulence-associated histidine kinases

Function of pseudomonas porins in uptake and efflux.

G-protein-coupled receptor independent, immunomodulatory properties of chemokine CXCL9.

Genetic and molecular analysis of GogB, a phage-encoded type III-secreted substrate in Salmonella enterica serovar typhimurium with autonomous expression from its associated phage.

Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress

Identification of 526 conserved metazoan genetic innovations exposes a new role for cofactor E-like in neuronal microtubule homeostasis

Identification of oprG, a gene encoding a major outer membrane protein of Pseudomonas aeruginosa

Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system.

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

IslandViewer update: Improved genomic island discovery and visualization.

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Mining the Pseudomonas genome.

Molecular analyses of disease pathogenesis: application of bovine microarrays.

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa ⬇️

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.

PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea ⬇️

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures

Population genomics: modeling the new and a renaissance of the old

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology

The Amino Terminus of Outer Membrane Protein OprF Forms Channels in Lipid Bilayer Membranes: Correlation with a Three-Dimensional Model

The OxyR-regulated phnW gene encoding 2-aminoethylphosphonate:pyruvate aminotransferase helps protect Pseudomonas aeruginosa from tert-butyl hydroperoxide

Whole-genome sequencing and social-network analysis of a tuberculosis outbreak