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Authors whose works are in public domain in at least one jurisdiction

List of works by Tazro Ohta

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ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data

scientific article published on 09 November 2018
Experimental Design-Based Functional Mining and Characterization of High-Throughput Sequencing Data in the Sequence Read Archive

scientific article published on October 22, 2013
Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data

scientific article
BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020
GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation

scientific article published on 17 October 2019
Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive

scientific article
Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

scientific article published on 30 November 2020
Metadata handling for BioHackathon publications through BioHackrXiv

Integrative analysis of transcription factor occupancy at enhancers and disease risk loci in noncoding genomic regions

DNApod: DNA polymorphism annotation database from next-generation sequence read archives

scientific article
Data validation and schema interoperability

Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows

scientific article published in 2022
Recording provenance of workflow runs with RO-Crate

scientific article published on 10 September 2024
Metadata for BioHackrXiv Markdown publications

CiTO support for BioHackrXiv

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

scientific article published on 01 April 2019
Squalomix: shark and ray genome analysis consortium and its data sharing platform

scientific article published in 2022
Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis 'Somei-yoshino' across the Japanese archipelago

scientific article published on 19 February 2018
Persistence, metadata collection and re-architecture of BioHackrXiv

BioHackEU24 report: ORCID and ROR identifiers in BioHackrXiv reports

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