List of works - Theodore S Kalbfleisch

"Adopt-a-Tissue" Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare

publication published on 26 March 2021

A MicroRNA gene is hosted in an intron of a schizophrenia-susceptibility gene.

scientific article

A Reference Genome Assembly of American Bison, Bison bison bison

scientific article published on 01 March 2021

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

scientific article published on 01 March 2021

A bioinformatics approach to identifying tail-anchored proteins in the human genome.

scientific article

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

scientific article (publication date: 10 February 2000)

A stochastic model of gene transcription: an application to L1 retrotransposition events.

scientific article published on 19 April 2006

A survey of polymorphisms detected from sequences of popular beef breeds.

scientific article published in November 2015

Allelic Variation in CXCL16 Determines CD3+ T Lymphocyte Susceptibility to Equine Arteritis Virus Infection and Establishment of Long-Term Carrier State in the Stallion

scientific article

Annotation of the Protein Coding Regions of the Equine Genome

scientific article published on 24 June 2015

Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data

scientific article

Characterization of an APC Promoter 1B deletion in a Patient Diagnosed with Familial Adenomatous Polyposis via Whole Genome Shotgun Sequencing

scientific article published on 26 June 2015

Characterization of ovine Nectin-4, a novel peste des petits ruminants virus receptor.

scientific article

Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads

scientific article

Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease.

scientific article published in March 2017

Comprehensive characterization of an individual’s LINE-1 insertion profile using next generation sequencing data.

scientific article published on 31 July 2012

Computational and biological inference of gene regulatory networks of the LINE-1 retrotransposon.

scientific article

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle

scientific article published on 01 April 2020

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

scientific article published on 27 July 2017

Differential expression of microRNA expression in tamoxifen-sensitive MCF-7 versus tamoxifen-resistant LY2 human breast cancer cells.

scientific article published on 10 September 2011

Downregulation of eca-mir-128 in seminal exosomes and enhanced expression of CXCL16 in the stallion reproductive tract are associated with long-term persistence of equine arteritis virus

scientific article published on 14 February 2018

Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins.

scientific article

Equine Arteritis Virus Uses Equine CXCL16 as an Entry Receptor

scientific article published on 13 January 2016

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis

scientific article published on 29 July 2019

Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition

scientific article published on 11 September 2019

Exclusion of adrenoceptor alpha 2 variants in a horse insensitive to medetomidine.

scientific article

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep

scientific article

Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies

scientific article

Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

scientific article

Health status, perceptions and needs of Hispanics in rural Shelbyville, Kentucky.

scientific article published on February 2015

Improved reference genome for the domestic horse increases assembly contiguity and composition

article

Interaction between smoking history and gene expression levels impacts survival of breast cancer patients

scientific article published on 23 July 2015

Mapping whole genome shotgun sequence and variant calling in mammalian species without their reference genomes

scientific article

Molecular cloning and functional expression of the K+ channel KV7.1 and the regulatory subunit KCNE1 from equine myocardium.

scientific article

Next generation sequencing analysis of soy glyceollins and 17-β estradiol: Effects on transcript abundance in the female mouse brain

scientific article published on 5 May 2017

Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells.

scientific article published on 08 August 2016

Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases.

scientific article published on 26 July 2016

Ovine reference materials and assays for prion genetic testing

scientific article

Prevalence of the prion protein gene E211K variant in U.S. cattle

scientific article

Reduced lentivirus susceptibility in sheep with TMEM154 mutations.

scientific article

Ruling out BGN variants as simple X-linked causative mutations for bilateral corneal stromal loss in Friesian horses

scientific article published on 23 September 2018

SNPs for parentage testing and traceability in globally diverse breeds of sheep

scientific article

The miR-29 transcriptome in endocrine-sensitive and resistant breast cancer cells.

scientific article published on 12 July 2017

The pattern of polymorphism in Arabidopsis thaliana

scientific article

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension.

scientific article

Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity.

scientific article published on 2 August 2017

Using triallelic SNPs for determining parentage in North American yak ( Bos grunniens) and estimating cattle ( B. taurus) introgression

scientific article published on 04 September 2020

Validation of a mathematical model of gene transcription in aggregated cellular systems: application to l1 retrotransposition.

scientific article published in April 2007

List of works by Theodore S Kalbfleisch

"Adopt-a-Tissue" Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare

A MicroRNA gene is hosted in an intron of a schizophrenia-susceptibility gene.

A Reference Genome Assembly of American Bison, Bison bison bison

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

A bioinformatics approach to identifying tail-anchored proteins in the human genome.

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

A stochastic model of gene transcription: an application to L1 retrotransposition events.

A survey of polymorphisms detected from sequences of popular beef breeds.

Allelic Variation in CXCL16 Determines CD3+ T Lymphocyte Susceptibility to Equine Arteritis Virus Infection and Establishment of Long-Term Carrier State in the Stallion

Annotation of the Protein Coding Regions of the Equine Genome

Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data

Characterization of an APC Promoter 1B deletion in a Patient Diagnosed with Familial Adenomatous Polyposis via Whole Genome Shotgun Sequencing

Characterization of ovine Nectin-4, a novel peste des petits ruminants virus receptor.

Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads

Comparison of the diagnostic performance of bacterial culture of nasopharyngeal swab and bronchoalveolar lavage fluid samples obtained from calves with bovine respiratory disease.

Comprehensive characterization of an individual’s LINE-1 insertion profile using next generation sequencing data.

Computational and biological inference of gene regulatory networks of the LINE-1 retrotransposon.

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

Differential expression of microRNA expression in tamoxifen-sensitive MCF-7 versus tamoxifen-resistant LY2 human breast cancer cells.

Downregulation of eca-mir-128 in seminal exosomes and enhanced expression of CXCL16 in the stallion reproductive tract are associated with long-term persistence of equine arteritis virus

Epigenetic control of mammalian LINE-1 retrotransposon by retinoblastoma proteins.

Equine Arteritis Virus Uses Equine CXCL16 as an Entry Receptor

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis

Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition

Exclusion of adrenoceptor alpha 2 variants in a horse insensitive to medetomidine.

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep

Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies

Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes

Health status, perceptions and needs of Hispanics in rural Shelbyville, Kentucky.

Improved reference genome for the domestic horse increases assembly contiguity and composition

Interaction between smoking history and gene expression levels impacts survival of breast cancer patients

Mapping whole genome shotgun sequence and variant calling in mammalian species without their reference genomes

Molecular cloning and functional expression of the K+ channel KV7.1 and the regulatory subunit KCNE1 from equine myocardium.

Next generation sequencing analysis of soy glyceollins and 17-β estradiol: Effects on transcript abundance in the female mouse brain

Nuclear respiratory factor-1 and bioenergetics in tamoxifen-resistant breast cancer cells.

Observations on macrolide resistance and susceptibility testing performance in field isolates collected from clinical bovine respiratory disease cases.

Ovine reference materials and assays for prion genetic testing

Prevalence of the prion protein gene E211K variant in U.S. cattle

Reduced lentivirus susceptibility in sheep with TMEM154 mutations.

Ruling out BGN variants as simple X-linked causative mutations for bilateral corneal stromal loss in Friesian horses

SNPs for parentage testing and traceability in globally diverse breeds of sheep

The miR-29 transcriptome in endocrine-sensitive and resistant breast cancer cells.

The pattern of polymorphism in Arabidopsis thaliana

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension.

Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity.

Using triallelic SNPs for determining parentage in North American yak ( Bos grunniens) and estimating cattle ( B. taurus) introgression

Validation of a mathematical model of gene transcription in aggregated cellular systems: application to l1 retrotransposition.