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List of works by Raoul Bonnal

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

scientific article

Analysis RNA-seq and Noncoding RNA.

scientific article published in January 2016

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments ⬇️

scientific article published on May 28, 2012

BioRuby: bioinformatics software for the Ruby programming language

scientific article

Characterization of nucleotide misincorporation patterns in the iceman's mitochondrial DNA

scientific article (publication date: 8 January 2010)

Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays

scientific article

Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate ⬇️

scientific article

Complete mitochondrial genome sequence of the Tyrolean Iceman

scientific article published on 30 October 2008

De novo transcriptome profiling of highly purified human lymphocytes primary cells

scientific article

Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ

scientific article published on 20 April 2021

Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer

scientific article

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

scientific article published on 13 June 2016

Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis

scientific article

Next-Generation Sequencing Analysis of Long Noncoding RNAs in CD4+ T Cell Differentiation

scientific article

Pipengine: an ultra light YAML-based pipeline execution engine

scientific article published on 30 August 2017

Reliable resequencing of the human dystrophin locus by universal long polymerase chain reaction and massive pyrosequencing

scientific article

Repression of miR-31 by BCL6 stabilizes the helper function of human follicular helper T cells

scientific article

Role of microRNAs and long-non-coding RNAs in CD4(+) T-cell differentiation.

scientific article published on May 2013

Sharing Programming Resources Between Bio* Projects

scientific article published on 01 January 2019

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment

scientific article published on 03 April 2006

The Ruby UCSC API: accessing the UCSC genome database using Ruby ⬇️

scientific article published on September 21, 2012

The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4.

scientific article published on 26 January 2015

Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.

scientific article

miRiadne: a web tool for consistent integration of miRNA nomenclature.

scientific article published on 20 April 2015

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