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List of works by Laurent Philippot

16S rDNA analysis for characterization of denitrifying bacteria isolated from three agricultural soils

article

A closer look at the functions behind ecosystem multifunctionality: A review

scientific article published in 2020

A core microbiota of the plant-earthworm interaction conserved across soils

scientific article published in 2020

A highly conserved core bacterial microbiota with nitrogen-fixation capacity inhabits the xylem sap in maize plants

scientific article published in 2022

A methodological framework to embrace soil biodiversity

scientific article published on 13 July 2019

A plant perspective on nitrogen cycling in the rhizosphere

scientific article published on 09 February 2019

Abundance and activity of nitrate reducers in an arable soil are more affected by temporal variation and soil depth than by elevated atmospheric [CO2]

scientific article published in 2011

Abundance of narG, nirS, nirK, and nosZ genes of denitrifying bacteria during primary successions of a glacier foreland

scientific article published in September 2006

Abundance, activity and structure of denitrifier communities in phototrophic river biofilms (River Garonne, France)

article

Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization

scientific article

Additions of maize root mucilage to soil changed the structure of the bacterial community

article

Advantages of the metagenomic approach for soil exploration: reply from Vogel et al

scientific article published in 2009

An innovative soil mesocosm system for studying the effect of soil moisture and background NO on soil surface C and N trace gas fluxes

scientific article published in 2024

Assessment of the resilience and resistance of remediated soils using denitrification as model process

Biotic and Abiotic Predictors of Potential N2o Emissions from Denitrification in Irish Grasslands Soils: A National-Scale Field Study

scientific article published in 2022

Biotic and abiotic predictors of potential N2O emissions from denitrification in Irish grasslands soils: A national-scale field study

scientific article published in 2022

Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe

scientific article published on 6 January 2024

Can differences in microbial abundances help explain enhanced N2O emissions in a permanent grassland under elevated atmospheric CO2?

article by Kathleen Regan et al published 10 July 2011 in Global Change Biology

Characterization and transcriptional analysis of Pseudomonas fluorescens denitrifying clusters containing the nar, nir, nor and nos genes

scientific article published in February 2001

Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach.

scientific article

Comparative genetic diversity of the narG, nosZ, and 16S rRNA genes in fluorescent pseudomonads.

scientific article

Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions

scientific article published on 06 November 2018

Corrigendum to “Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR” [J. Microbiol. Methods 59 (2004) 327–335]

article

Cover Crop Management Practices Rather Than Composition of Cover Crop Mixtures Affect Bacterial Communities in No-Till Agroecosystems

scientific article published on 09 July 2019

DNA extraction from soils: old bias for new microbial diversity analysis methods

scientific article

Deciphering the biotic and abiotic drivers of coalescence asymmetry between soil and manure microbiomes

scholarly article published in March 2024

Denitrification in pathogenic bacteria: for better or worst?

scientific article

Denitrifying bacteria in bulk and maize-rhizospheric soil: diversity and N2O-reducing abilities.

scientific article published in July 2004

Denitrifying genes in bacterial and Archaeal genomes

scientific article

Differential response of N2O emissions, N2O-producing and N2O-reducing bacteria to varying tetracycline doses in fertilized soil

scientific article published in 2022

Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management

article

Differential responses of nitrate reducer community size, structure, and activity to tillage systems

scientific article

Direct seeding mulch-based cropping increases both the activity and the abundance of denitrifier communities in a tropical soil

Dissimilatory nitrate reductases in bacteria

scientific article

Dissimilatory nitrite-reductase provides a competitive advantage to Pseudomonas sp. RTC01 to colonise the centre of soil aggregates

scientific article published in 1996

Distribution of High Bacterial Taxa Across the Chronosequence of Two Alpine Glacier Forelands ⬇️

scientific article published on October 9, 2010

Distribution of bacteria and nitrogen-cycling microbial communities along constructed Technosol depth-profiles.

scientific article

Do we need to understand microbial communities to predict ecosystem function? A comparison of statistical models of nitrogen cycling processes

article

Domestication-driven changes in plant traits associated with changes in the assembly of the rhizosphere microbiota in tetraploid wheat

scientific article published on 22 July 2020

Ecology of Denitrifying Prokaryotes in Agricultural Soil

Effect of primary mild stresses on resilience and resistance of the nitrate reducer community to a subsequent severe stress.

scientific article

Effect of soil type and plant species on the fluorescent pseudomonads nitrate dissimilating community

article published in 1999

Effectiveness of ecological rescue for altered soil microbial communities and functions ⬇️

scientific article

Effects of biosolids application on nitrogen dynamics and microbial structure in a saline-sodic soil of the former Lake Texcoco (Mexico).

scientific article published on 5 December 2009

Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils

article

Estimation of atrazine-degrading genetic potential and activity in three French agricultural soils.

scientific article published in June 2004

Exotic invasive plants increase productivity, abundance of ammonia-oxidizing bacteria and nitrogen availability in intermountain grasslands

article

Experimental removal and addition of leaf litter inputs reduces nitrate production and loss in a lowland tropical forest

article

Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community.

scientific article published in June 2005

Fitness in soil and rhizosphere of Pseudomonas fluorescens C7R12 compared with a C7R12 mutant affected in pyoverdine synthesis and uptake

scientific article published in 2000

Frequency and diversity of nitrate reductase genes among nitrate-dissimilating Pseudomonas in the rhizosphere of perennial grasses grown in field conditions.

scientific article published on 11 January 2005

Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment ⬇️

scientific article published on August 23, 2010

Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach

scientific article published on 28 June 2015

Genetic structure and activity of the nitrate-reducers community in the rhizosphere of different cultivars of maize

Genomics and Ecology of Novel N2O-Reducing Microorganisms

scientific article

Going back to the roots: the microbial ecology of the rhizosphere

scientific article

Impact of atmospheric CO2 and plant life forms on soil microbial activities

article

Impact of maize mucilage on atrazine mineralization and atzC abundance

scientific article published in September 2005

Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios

scientific article published on 06 April 2020

Impact of the Maize Rhizosphere on the Genetic Structure, the Diversity and the Atrazine-degrading Gene Composition of Cultivable Atrazine-degrading Communities

article

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

article

Influence of land-use intensity on the spatial distribution of N-cycling microorganisms in grassland soils

scientific article published in 2011

Influence of maize mucilage on the diversity and activity of the denitrifying community.

scientific article

Insights into the effect of soil pH on N(2)O and N(2) emissions and denitrifier community size and activity

scientific article

Insights into the resistance and resilience of the soil microbial community

scientific article

Inter-laboratory evaluation of the ISO standard 11063 "Soil quality - Method to directly extract DNA from soil samples".

scientific article published on 21 January 2011

Involvement of nitrate reductase and pyoverdine in competitiveness of Pseudomonas fluorescens strain C7R12 in soil

scientific article

Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus

scientific article published on 14 April 2021

Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity

scientific article published on 06 January 2022

Leaf-cutter ants engineer large nitrous oxide hot spots in tropical forests

scientific article published on 01 January 2019

Local response of bacterial densities and enzyme activities to elevated atmospheric CO2 and different N supply in the rhizosphere of Phaseolus vulgaris L

article

Long-term impact of 19 years’ farmyard manure or sewage sludge application on the structure, diversity and density of the protocatechuate-degrading bacterial community

Loss in microbial diversity affects nitrogen cycling in soil

scientific article

Loss in soil microbial diversity constrains microbiome selection and alters the abundance of N-cycling guilds in barley rhizosphere

scientific article published in 2022

Managing biotic interactions for ecological intensification of agroecosystems

scientific article published in 2014

Manipulating plant community composition to steer efficient N‐cycling in intensively managed grasslands

scientific article published in 2020

Mapping field-scale spatial patterns of size and activity of the denitrifier community.

scientific article published on 2 March 2009

Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms

scientific article

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

scientific article published on 24 February 2016

Microbial succession of nitrate-reducing bacteria in the rhizosphere of Poa alpina across a glacier foreland in the Central Alps.

scientific article published in September 2006

Molecular Tools to Assess the Diversity and Density of Denitrifying Bacteria in Their Habitats

scholarly article published 2007

Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils

scientific article

Monitoring of atrazine treatment on soil bacterial, fungal and atrazine-degrading communities by quantitative competitive PCR.

scientific article

N2O production, a widespread trait in fungi.

scientific article

Nickel mine spoils revegetation attempts: effect of pioneer plants on two functional bacterial communities involved in the N-cycle

scientific article

Nitrous Oxide and Climate Change

scholarly article published 12 August 2010

Peaks of in situ N2 O emissions are influenced by N2 O-producing and reducing microbial communities across arable soils.

scientific article published on 28 July 2017

Physiological significance of pedospheric nitric oxide for root growth, development, and organismic interactions

scientific article published on 17 July 2020

Plant communities can attenuate flooding induced N2O fluxes by altering nitrogen cycling microbial communities and plant nitrogen uptake

scientific article published in 2023

Plant traits related to nitrogen uptake influence plant-microbe competition

scientific article published in August 2015

Plant trait‐based approaches to improve nitrogen cycling in agroecosystems

scientific article published on 19 August 2019

Positive effects of plant association on rhizosphere microbial communities depend on plant species involved and soil nitrogen level

article

Purification of the dissimilative nitrate reductase of Pseudomonas fluorescens and the cloning and sequencing of its corresponding genes

scientific article published in February 1997

Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR

scientific article published on 01 June 2004

Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR.

scientific article

Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example.

scientific article published on 11 January 2008

Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.

scientific article published on August 2006

Recently identified microbial guild mediates soil N2O sink capacity

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment

article by Sara Hallin et al published 15 January 2009 in The ISME Journal

Relative Contribution of nirK- and nirS- Bacterial Denitrifiers as Well as Fungal Denitrifiers to Nitrous Oxide Production from Dairy Manure Compost

scientific article published on 28 November 2017

Relative abundances of proteobacterial membrane-bound and periplasmic nitrate reductases in selected environments.

scientific article

Relative involvement of nitrate and nitrite reduction in the competitiveness of Pseudomonas fluorescens in the rhizosphere of maize under non-limiting nitrate conditions

article by J Ghiglione published February 2002 in FEMS Microbiology Ecology

Relative involvement of nitrate and nitrite reduction in the competitiveness of Pseudomonas fluorescens in the rhizosphere of maize under non-limiting nitrate conditions

scientific article published on 01 February 2002

Remotely sensed canopy nitrogen correlates with nitrous oxide emissions in a lowland tropical rainforest

scholarly article by Fiona M Soper et al published September 2018 in Ecology

Response of total and nitrate-dissimilating bacteria to reduced N deposition in a spruce forest soil profile

article

Responses of Cajanus cajan and rhizospheric N-cycling communities to bioinoculants

article

Role of plant residues in determining temporal patterns of the activity, size, and structure of nitrate reducer communities in soil.

scientific article

Role of respiratory nitrate reductase in ability of Pseudomonas fluorescens YT101 to colonize the rhizosphere of maize

scientific article

Shifts in size, genetic structure and activity of the soil denitrifier community by nematode grazing

article published in 2010

Size exclusion experiment in a grassland field unravels top–down control of the soil fauna on microbial community assembly

scientific article published in 2024

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

article

Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands

scientific article

Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild

scientific article

Soil microbial diversity: an ISO standard for soil DNA extraction

article by Laurent Philippot et al published 6 July 2010 in Journal of Soils and Sediments

Spatial analysis of the root system coupled to microbial community inoculation shed light on rhizosphere bacterial community assembly

scientific article published in 2021

Spatial and temporal dynamics of nitrogen fixing, nitrifying and denitrifying microbes in an unfertilized grassland soil

scholarly article by Kathleen Regan et al published June 2017 in Soil Biology and Biochemistry

Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments.

scientific article published on 24 September 2012

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

scientific article published on 13 January 2011

Spatial distribution of the abundance and activity of the sulfate ester-hydrolyzing microbial community in a rape field

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

scientific article published on 23 July 2009

Spatio-Temporal Variations in the Abundance and Structure of Denitrifier Communities in Sediments Differing in Nitrate Content.

scientific article

Standardisation of methods in soil microbiology: progress and challenges

scientific article

Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate.

scientific article published in April 2006

Structure and activity of the nitrate-reducing community in the rhizosphere of Lolium perenne and Trifolium repens under long-term elevated atmospheric pCO.

scientific article

Taxonomic and functional characterization of microbial communities in Technosols constructed for remediation of a contaminated industrial wasteland

TerraGenome: a consortium for the sequencing of a soil metagenome

scientific article published in 2009

The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across an annual and a perennial cropping system.

scientific article

The ecological coherence of high bacterial taxonomic ranks

scientific article published in July 2010

The establishment of an introduced community of fluorescent pseudomonads in the soil and in the rhizosphere is affected by the soil type

scientific article published in 1999

The nitrification inhibitor dicyandiamide increases mineralization–immobilization turnover in slurry-amended grassland soil

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

scientific article published on 15 November 2012

Towards food, feed and energy crops mitigating climate change

scientific article

Tracking nitrate reducers and denitrifiers in the environment

scientific article

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

scientific article

Unraveling negative biotic interactions determining soil microbial community assembly and functioning

scientific article published on 28 July 2021

Use of functional genes to quantify denitrifiers in the environment.

scientific article published in February 2006

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