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List of works by Julia C Engelmann

A statistical approach to virtual cellular experiments: improved causal discovery using accumulation IDA (aIDA).

scientific article published on 6 August 2015

Agrobacterium tumefaciens promotes tumor induction by modulating pathogen defense in Arabidopsis thaliana

scientific article published on 30 September 2009

An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach

scientific article published on 15 December 2006

Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma

scientific article

Commonly altered genomic regions in acute myeloid leukemia are enriched for somatic mutations involved in chromatin remodeling and splicing

scientific article published on 13 September 2012

Comprehensive Metaboproteomics of Burkitt's and Diffuse Large B-Cell Lymphoma Cell Lines and Primary Tumor Tissues Reveals Distinct Differences in Pyruvate Content and Metabolism

scientific article published on 06 February 2017

Cooperative STAT/NF-κB signaling regulates lymphoma metabolic reprogramming and aberrant GOT2 expression.

scientific article

Correction: Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype

scientific article published on 25 August 2016

Data Normalization of (1)H NMR Metabolite Fingerprinting Data Sets in the Presence of Unbalanced Metabolite Regulation

scientific article

Early senescence and cell death in Arabidopsis saul1 mutants involves the PAD4-dependent salicylic acid pathway

scientific article published on 15 June 2012

Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis

scientific article

External calibration with Drosophila whole-cell spike-ins delivers absolute mRNA fold changes from human RNA-Seq and qPCR data.

scientific article

FastqPuri: high-performance preprocessing of RNA-seq data

scientific article published on 03 May 2019

Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants

scientific article

High-Dimensional Profiling for Computational Diagnosis

scientific article published on January 2017

Increased expression of c-Jun in nonalcoholic fatty liver disease

scientific article published on 03 February 2014

Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach ⬇️

scientific article published on October 8, 2008

Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species

scientific article

Phosphorylation of Argonaute proteins affects mRNA binding and is essential for microRNA-guided gene silencing in vivo.

scientific article published on 23 June 2017

Prognostic value of genetic alterations in children with first bone marrow relapse of childhood B-cell precursor acute lymphoblastic leukemia ⬇️

scientific article published on June 13, 2012

Selenium-binding protein 1 is down-regulated in malignant melanoma.

scientific article published on 2 January 2018

Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype

scientific article published on 21 July 2016

Synergy of interleukin 10 and toll-like receptor 9 signalling in B cell proliferation: Implications for lymphoma pathogenesis.

scientific article published on 26 September 2016

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades

scientific article

The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation

scientific article

Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations

scientific article published on 23 April 2012

Transcriptome sequencing of melanocytic nevi and melanomas fromGrm1transgenic mice to determine melanoma driver mutations

scientific article published on 07 April 2014

Unsupervised meta-analysis on diverse gene expression datasets allows insight into gene function and regulation.

scientific article published on 26 May 2008

Zygotic Genome Activation Occurs Shortly after Fertilization in Maize

scientific article

miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.

scientific article

siPools: highly complex but accurately defined siRNA pools eliminate off-target effects.

scientific article published on 29 May 2014

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