List of works - Xianjin Xu

An analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior.

scientific article

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

scientific article

Detection of persistent organic pollutants binding modes with androgen receptor ligand binding domain by docking and molecular dynamics.

scientific article

Docking-based inverse virtual screening: methods, applications, and challenges.

scientific article published in February 2018

Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction

scientific article

Identification of key residues for protein conformational transition using elastic network model.

scientific article

Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.

scientific article

Landscape Zooming toward the Prediction of RNA Cotranscriptional Folding

scientific article published on 08 February 2022

Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor.

scientific article published on 10 November 2017

MDockPeP: An ab-initio protein-peptide docking server

scientific article published on 23 October 2018

Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions

scientific article published in November 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring.

scientific article published in November 2010

SM-TF: A structural database of small molecule-transcription factor complexes

scientific article published on 24 March 2016

The Usage of ACCLUSTER for Peptide Binding Site Prediction

scientific article

The interactions and recognition of cyclic peptide mimetics of Tat with HIV-1 TAR RNA: a molecular dynamics simulation study

scientific article published on 03 September 2012

Thermal stability and unfolding pathways of Sso7d and its mutant F31A: insight from molecular dynamics simulation

scientific article published on 01 April 2011

List of works by Xianjin Xu

An analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Detection of persistent organic pollutants binding modes with androgen receptor ligand binding domain by docking and molecular dynamics.

Docking-based inverse virtual screening: methods, applications, and challenges.

Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction

Identification of key residues for protein conformational transition using elastic network model.

Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.

Landscape Zooming toward the Prediction of RNA Cotranscriptional Folding

Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor.

MDockPeP: An ab-initio protein-peptide docking server

Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring.

SM-TF: A structural database of small molecule-transcription factor complexes

The Usage of ACCLUSTER for Peptide Binding Site Prediction

The interactions and recognition of cyclic peptide mimetics of Tat with HIV-1 TAR RNA: a molecular dynamics simulation study

Thermal stability and unfolding pathways of Sso7d and its mutant F31A: insight from molecular dynamics simulation