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List of works by Carl Herrmann

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

scientific article

A comprehensive comparison of tools for differential ChIP-seq analysis.

scientific article

Ab initio identification of putative human transcription factor binding sites by comparative genomics

scientific article

Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome

scientific article published on 24 February 2021

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

scientific article published on 05 February 2020

Clustering proteins from interaction networks for the prediction of cellular functions

scientific article

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

scientific article

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

scientific article published in Nature Communications

Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children

scientific article published on 24 March 2016

Evolutionary conserved gene co-expression drives generation of self-antigen diversity in medullary thymic epithelial cells

scientific article published on 15 October 2015

General matter coupled gauged supergravity in five dimensions

Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues.

scientific article published on 7 August 2017

Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype

scientific article published on 18 December 2020

Identification of DNA methylation changes at cis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing

scientific article

Identification of cis-regulatory modules encoding temporal dynamics during development.

scientific article

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.

scientific article published on 21 August 2014

Impact of cancer mutational signatures on transcription factor motifs in the human genome

scientific article published on 20 May 2019

Integrative Genome-Scale Analysis Identifies Epigenetic Mechanisms of Transcriptional Deregulation in Unfavorable Neuroblastomas

scientific article published on 07 September 2016

LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.

scientific article published on December 2015

MYCN mediates cysteine addiction and sensitizes neuroblastoma to ferroptosis

scientific article published on 28 April 2022

MYCN-driven regulatory mechanisms controlling LIN28B in neuroblastoma

scientific article published on 26 June 2015

MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences

scientific article

Myelodysplastic cells in patients reprogram mesenchymal stromal cells to establish a transplantable stem cell niche disease unit

scientific article published on 3 April 2014

PrOnto database : GO term functional dissimilarity inferred from biological data

scientific article

Prenatal maternal stress and wheeze in children: novel insights into epigenetic regulation

scientific article published on 28 June 2016

RSAT 2015: Regulatory Sequence Analysis Tools.

scientific article published on 22 April 2015

SimCT: a generic tool to visualize ontology-based relationships for biological objects

scientific article published on 23 September 2009

Telomerase activation by genomic rearrangements in high-risk neuroblastoma

scientific article published on 14 October 2015

Transcriptional and epigenetic signatures of zygotic genome activation during early Drosophila embryogenesis

scientific article

Using cisTargetX to predict transcriptional targets and networks in Drosophila.

scientific article published in January 2012

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules ⬇️

scientific article published on June 20, 2012

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