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List of works by Swaraj Basu

A Catalogue of Putative cis-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors

scientific article

Accurate mapping of mitochondrial DNA deletions and duplications using deep sequencing

scientific article published on 14 December 2020

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs.

scientific article published on 19 February 2015

Comparative analyses of genotype dependent expressed sequence tags and stress-responsive transcriptome of chickpea wilt illustrate predicted and unexpected genes and novel regulators of plant immunity

scientific article published on 5 September 2009

Comparative proteomics reveals a role for seed storage protein AmA1 in cellular growth, development, and nutrient accumulation

scientific article published on 08 October 2013

Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis.

scientific article published on 15 September 2015

Copy-choice recombination during mitochondrial L-strand synthesis causes DNA deletions

scientific article published in Nature Communications

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.

scientific article

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

scientific article published on 21 April 2017

Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi.

scientific article published on 29 March 2018

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development

scientific article published on 7 February 2013

Integrative network analyses of wilt transcriptome in chickpea reveal genotype dependent regulatory hubs in immunity and susceptibility

scientific article published on 25 April 2018

Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution

scientific article

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome

scientific article published on 15 September 2016

Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse

scientific article published on 10 September 2017

Topoisomerase 3α Is Required for Decatenation and Segregation of Human mtDNA.

scientific article published on 14 December 2017

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