List of works - Lieven Clement

A general and powerful stage-wise testing procedure for differential expression and differential transcript usage

A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta

scientific article published on 20 January 2016

A unified censored normal regression model for qPCR differential gene expression analysis

scientific article

An extension of the Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data

scientific article

An omnibus consistent adaptive percentile modified Wilcoxon rank sum test with applications in gene expression studies.

scientific article published on 16 April 2012

Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling)

scientific article

Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection

scientific article (publication date: 2016)

Flow cytometry for fast microbial community fingerprinting

scientific article published on 8 December 2011

Flow cytometry for immediate follow-up of drinking water networks after maintenance

scientific article

Impact of variance components on reliability of absolute quantification using digital PCR

scientific article

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model

scientific article

Initial community evenness favours functionality under selective stress

scientific article

Leaf responses to mild drought stress in natural variants of Arabidopsis

scientific article

Mass spectrometrists should search for all peptides, but assess only the ones they care about

scientific article published in June 2017

Measuring the biodiversity of microbial communities by flow cytometry

scientific article published in 2016

Nonparametric trend detection in river monitoring network data: a spatio-temporal approach

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

scholarly article published 18 January 2018

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

scientific article

Probabilistic index models

RNA sequencing data: hitchhiker's guide to expression analysis

Robust summarization and inference in proteome-wide label-free quantification

scientific article published on 22 April 2020

Simultaneous mapping of multiple gene loci with pooled segregants

scientific article published on 18 February 2013

Testing for trends in the violation frequency of an environmental threshold in rivers

scientific article

Trajectory-based differential expression analysis for single-cell sequencing data

scientific article published on 05 March 2020

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering

scientific article

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering

scientific article published on 31 August 2014

moFF: a robust and automated approach to extract peptide ion intensities

scientific article

unifiedWMWqPCR: the unified Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data in R.

scientific article

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

scholarly article published 30 June 2017

List of works by Lieven Clement

A general and powerful stage-wise testing procedure for differential expression and differential transcript usage

A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta

A unified censored normal regression model for qPCR differential gene expression analysis

An extension of the Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data

An omnibus consistent adaptive percentile modified Wilcoxon rank sum test with applications in gene expression studies.

Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling)

Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection

Flow cytometry for fast microbial community fingerprinting

Flow cytometry for immediate follow-up of drinking water networks after maintenance

Impact of variance components on reliability of absolute quantification using digital PCR

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model

Initial community evenness favours functionality under selective stress

Leaf responses to mild drought stress in natural variants of Arabidopsis

Mass spectrometrists should search for all peptides, but assess only the ones they care about

Measuring the biodiversity of microbial communities by flow cytometry

Nonparametric trend detection in river monitoring network data: a spatio-temporal approach

Observation weights to unlock bulk RNA-seq tools for zero inflation and single-cell applications

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

Probabilistic index models

RNA sequencing data: hitchhiker's guide to expression analysis

RNA sequencing data: hitchhiker's guide to expression analysis

Robust summarization and inference in proteome-wide label-free quantification

Simultaneous mapping of multiple gene loci with pooled segregants

Testing for trends in the violation frequency of an environmental threshold in rivers

Trajectory-based differential expression analysis for single-cell sequencing data

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering

moFF: a robust and automated approach to extract peptide ion intensities

unifiedWMWqPCR: the unified Wilcoxon-Mann-Whitney test for analyzing RT-qPCR data in R.

zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications