List of works - Ali Sharifi-Zarchi

ARYANA: Aligning Reads by Yet Another Approach

scientific article

Blockage of the Epithelial-to-Mesenchymal Transition Is Required for Embryonic Stem Cell Derivation.

scientific article published on 6 September 2017

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

article

Comparative In Vitro Evaluation of Human Dental Pulp and Follicle Stem Cell Commitment.

scientific article published on 26 September 2016

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

scientific article published on 12 December 2017

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

scientific article published on 11 November 2019

Draft genome of provides insights into conserved regulatory elements of the brain restriction gene in planarians

article

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription

scientific article published on 03 October 2019

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast

scientific article published on 31 July 2017

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

scientific article published on 2 June 2015

Inferring causal molecular networks: empirical assessment through a community-based effort

scientific article

Inhibition of TGFβ signaling promotes ground state pluripotency

scientific article published in February 2014

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase.

scientific article

Natural biased coin encoded in the genome determines cell strategy

scientific article

Proteome Analysis of Ground State Pluripotency.

scientific article

Small RNA Sequencing Reveals Dlk1-Dio3 Locus-Embedded MicroRNAs as Major Drivers of Ground-State Pluripotency.

scientific article published on 7 November 2017

Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm.

scientific article published in February 2013

List of works by Ali Sharifi-Zarchi

ARYANA: Aligning Reads by Yet Another Approach

Blockage of the Epithelial-to-Mesenchymal Transition Is Required for Embryonic Stem Cell Derivation.

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

Comparative In Vitro Evaluation of Human Dental Pulp and Follicle Stem Cell Commitment.

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

Draft genome of provides insights into conserved regulatory elements of the brain restriction gene in planarians

Genome-Wide Distribution of Nascent Transcripts in Sperm DNA, Products of a Late Wave of General Transcription

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

Inferring causal molecular networks: empirical assessment through a community-based effort

Inhibition of TGFβ signaling promotes ground state pluripotency

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase.

Natural biased coin encoded in the genome determines cell strategy

Proteome Analysis of Ground State Pluripotency.

Small RNA Sequencing Reveals Dlk1-Dio3 Locus-Embedded MicroRNAs as Major Drivers of Ground-State Pluripotency.

Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm.