List of works - Dinler A Antunes

APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations

scientific article published on 02 March 2019

Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data.

scientific article

CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes.

scientific article published on 8 February 2013

DINC 2.0: A New Protein-Peptide Docking Webserver Using an Incremental Approach.

scientific article published in November 2017

DockTope: a Web-based tool for automated pMHC-I modelling

scientific article published on 17 December 2015

Efficacy of an inactivated, recombinant bovine herpesvirus type 5 (BoHV-5) vaccine ⬇️

scientific article published on August 17, 2010

Frequency, Private Specificity, and Cross-Reactivity of Preexisting Hepatitis C Virus (HCV)-Specific CD8+ T Cells in HCV-Seronegative Individuals: Implications for Vaccine Responses.

scientific article published on 3 June 2015

General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept

scientific article published on 12 March 2018

Immunogenic epitopes of Hantaviruses' N protein are restricted to conserved regions

scientific article published on 01 January 2012

Improved structural method for T-cell cross-reactivity prediction

scientific article published on 30 June 2015

Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy

scientific article published on 4 October 2017

Lessons from molecular modeling human α-L-iduronidase.

scientific article published on 18 October 2014

Markov state modeling reveals alternative unbinding pathways for peptide-MHC complexes

scientific article published on 12 November 2020

Native State of Complement Protein C3d Analysed via Hydrogen Exchange and Conformational Sampling

scientific article published on 24 March 2018

Neutralizing antibodies to bovine herpesvirus types 1 (BoHV-1) and 5 (BoHV-5) and its subtypes

scientific article published on 28 October 2009

New insights into the in silico prediction of HIV protease resistance to nelfinavir

scientific article

Revealing Unknown Protein Structures Using Computational Conformational Sampling Guided by Experimental Hydrogen-Exchange Data

scientific article published on 31 October 2018

Structural Modeling and Molecular Dynamics of the Immune Checkpoint Molecule HLA-G

scientific article published on 06 November 2020

Structural allele-specific patterns adopted by epitopes in the MHC-I cleft and reconstruction of MHC:peptide complexes to cross-reactivity assessment

scientific article (publication date: 26 April 2010)

Structural in silico analysis of cross-genotype-reactivity among naturally occurring HCV NS3-1073-variants in the context of HLA-A*02:01 allele.

scientific article published on 21 April 2011

Structure-based Methods for Binding Mode and Binding Affinity Prediction for Peptide-MHC Complexes

scientific article published on 01 January 2018

Understanding the challenges of protein flexibility in drug design.

scientific article published on 28 September 2015

List of works by Dinler A Antunes