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List of works by James M Reecy

A Limousin specific myostatin allele affects longissimus muscle area and fatty acid profiles in a Wagyu-Limousin F2 population.

scientific article published on 11 February 2009

A QTL resource and comparison tool for pigs: PigQTLDB.

scientific article published on 29 October 2005

A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens.

scientific article published on 21 May 2018

A nonsense mutation in cGMP-dependent type II protein kinase (PRKG2) causes dwarfism in American Angus cattle.

scientific article

ANEXdb: an integrated animal ANnotation and microarray EXpression database

scientific article (publication date: 20 November 2009)

Abomasal casein infusion enhances the mitogenic activity of serum from protein-restricted steers.

scientific article

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

article

Allied industry approaches to alter intramuscular fat content and composition in beef animals.

scientific article published on January 2010

An evaluation of bovine respiratory disease complex in feedlot cattle: Impact on performance and carcass traits using treatment records and lung lesion scores

scientific article published on 30 January 2009

An evaluation of circulating bovine viral diarrhea virus type 2 maternal antibody level and response to vaccination in Angus calves.

scientific article published on 23 July 2013

An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle

scientific article published in Scientific Reports

Analyses of pig genomes provide insight into porcine demography and evolution

scientific article

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era.

scientific article

Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information

scientific article published on 23 January 2007

Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species

scientific article (publication date: June 2008)

AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond.

scientific article published on 29 November 2006

Association of polymorphisms in solute carrier family 27, isoform A6 (SLC27A6) and fatty acid-binding protein-3 and fatty acid-binding protein-4 (FABP3 and FABP4) with fatty acid composition of bovine milk.

scientific article published on 5 July 2013

Association of toll-like receptor four single nucleotide polymorphisms with incidence of infectious bovine keratoconjunctivitis (IBK) in cattle.

scientific article published on 12 October 2010

Associations between infectious bovine keratoconjunctivitis at weaning and ultrasongraphically measured body composition traits in yearling cattle.

scientific article published on January 2014

Associations of polymorphisms in the promoter I of bovine acetyl-CoA carboxylase-alpha gene with beef fatty acid composition.

scientific article published on 7 December 2009

BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence.

scientific article

Bayesian genome-wide association analysis of growth and yearling ultrasound measures of carcass traits in Brangus heifers.

scientific article published in October 2012

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL

scientific article

Body composition and gene expression QTL mapping in mice reveals imprinting and interaction effects

scientific article

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

scientific article published in January 2019

Cattle infection response network and its functional modules.

scientific article published on 5 January 2018

Characterization of gene expression in double-muscled and normal-muscled bovine embryos.

scientific article published in December 2003

Chicken Nkx-2.8: a novel homeobox gene expressed in early heart progenitor cells and pharyngeal pouch-2 and -3 endoderm.

scientific article published on August 1997

Comparative analysis of GDF 8 (myostatin) in Bos indicus and Bos taurus

scientific article published on 01 August 2006

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

scientific article

DNA polymorphisms in bovine fatty acid synthase are associated with beef fatty acid composition.

scientific article published in February 2008

Deriving Gene Networks from SNP Associated with Triacylglycerol and Phospholipid Fatty Acid Fractions from Ribeyes of Angus Cattle.

scientific article published on 20 June 2016

Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis).

scientific article published on 5 October 2017

Design database for quantitative trait loci (QTL) data warehouse, data mining, and meta-analysis.

scientific article

Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation

scientific article

Development of an in silico coding gene SNP map in pigs.

scientific article published on 19 May 2008

Developmental progress and current status of the Animal QTLdb

scientific article

Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content

scientific article

Differential gene expression in the rat soleus muscle during early work overload-induced hypertrophy

scientific article published on 14 December 2001

Effects of increasing dietary oil inclusion from different sources on growth performance, carcass and meat quality traits, and fatty acid profile in genetically lean immunocastrated male pigs

scientific article published in 2021

Embryonic expression of an Nkx2‐5/Cre gene using ROSA26 reporter mice ⬇️

scientific article published on December 1, 2001

Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology

scientific article published in 2024

Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle.

scientific article

Estimation of relationships between mineral concentration and fatty acid composition of longissimus muscle and beef palatability traits1 ⬇️

scientific article published on April 21, 2011

Evaluation of response to bovine viral diarrhea virus type 2 vaccination and timing of weaning on yearling ultrasound body composition, performance, and carcass quality traits in Angus calves

scientific article published on 17 September 2013

Evaluation of responses to vaccination of Angus cattle for four viruses that contribute to bovine respiratory disease complex

scientific article published in November 2017

Evaluation of variant identification methods for whole genome sequencing data in dairy cattle.

scientific article published in November 2014

Evidence for a major QTL associated with host response to porcine reproductive and respiratory syndrome virus challenge.

scientific article published on 28 December 2011

Expeditor: a pipeline for designing primers using human gene structure and livestock animal EST information

scientific article published on 14 December 2004

Feeding value of frost-damaged soybeans for lambs

scientific article published on 01 July 1992

Functional and phylogenetic analyses of a melanocortin-4 receptor mutation in domestic pigs.

scientific article published on January 2004

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

scientific article published on 24 July 2016

Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle

article

Gene co-expression network analysis provides novel insights into myostatin regulation at three different mouse developmental timepoints

scientific article published on 19 February 2015

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection.

scientific article published on 10 April 2017

Genetic parameters and genetic correlations among triacylglycerol and phospholipid fractions in Angus cattle.

scientific article

Genetic parameters for carnitine, creatine, creatinine, carnosine, and anserine concentration in longissimus muscle and their association with palatability traits in Angus cattle

Genetic parameters for concentrations of minerals in longissimus muscle and their associations with palatability traits in Angus cattle

scientific article published on 10 December 2012

Genetic parameters for sensory traits in longissimus muscle and their associations with tenderness, marbling score, and intramuscular fat in Angus cattle

scientific article published on 20 November 2014

Genetic polymorphisms in bovine transferrin receptor 2 (TFR2) and solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1) genes and their association with beef iron content

scientific article published on 07 July 2011

Genome-wide association and prediction of direct genomic breeding values for composition of fatty acids in Angus beef cattle

scientific article

Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle.

scientific article

Genome-wide association study for response to vaccination in Angus calves

scientific article published on 08 January 2019

Genome-wide association study of concentrations of iron and other minerals in longissimus muscle of Angus cattle1 ⬇️

scientific article published on July 23, 2013

Genome-wide association study of infectious bovine keratoconjunctivitis in Angus cattle

scientific article

Genome-wide methylation profile following prenatal and postnatal dietary omega-3 fatty acid supplementation in pigs.

scientific article

Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure

scientific article

Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array.

scientific article

Genomic analysis suggests KITLG is responsible for a roan pattern in two Pakistani goat breeds

scientific article

Heritability and Bayesian genome-wide association study of first service conception and pregnancy in Brangus heifers.

scientific article

Identification of 10 882 porcine microsatellite sequences and virtual mapping of 4528 of these sequences

scientific article published on 09 June 2007

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection

scientific article published on 28 May 2015

Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis

scientific article published on 27 November 2007

Identification of genome-wide SNP-SNP interactions associated with important traits in chicken.

scientific article published on 21 November 2017

Identification of genomic regions associated with feed efficiency in Nelore cattle

scientific article

Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.

scientific article

Identification of upstream regulatory regions in the heart-expressed homeobox gene Nkx2-5.

scientific article published in February 1999

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data

scientific article published on 07 May 2019

In vitro neutralization of HoBi-like viruses by antibodies in serum of cattle immunized with inactivated or modified live vaccines of bovine viral diarrhea viruses 1 and 2 ⬇️

scientific article published on May 20, 2013

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples.

scientific article

Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken

scientific article published in Scientific Reports

Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle.

scientific article published on 22 February 2018

Integration of structural and functional genomics

scientific article published on 01 August 2006

Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle.

scientific article published on 7 February 2018

Interleukin-8, interleukin-1beta, and interferon-gamma levels are linked to PRRS virus clearance.

scientific article published in April 2010

Large-scale gene co-expression network as a source of functional annotation for cattle genes

scientific article

Lipid metabolism, adipocyte depot physiology and utilization of meat animals as experimental models for metabolic research

scientific article

Mapping genetic loci that interact with myostatin to affect growth traits.

scientific article published on 22 June 2011

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

scientific article published on 19 February 2018

Multiple regions of the porcine alpha-skeletal actin gene modulate muscle-specific expression in cell culture and directly injected skeletal muscle.

scientific article published on January 1998

Myostatin genotype regulates muscle-specific miRNA expression in mouse pectoralis muscle.

scientific article

Network Analysis Reveals Putative Genes Affecting Meat Quality in Angus Cattle.

scientific article published on 6 November 2017

Polymorphisms in calpastatin and mu-calpain genes are associated with beef iron content

scientific article published on 05 December 2013

Polymorphisms in lipogenic genes and milk fatty acid composition in Holstein dairy cattle

scientific article published on 08 October 2014

Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region

scientific article

Probing genetic control of swine responses to PRRSV infection: current progress of the PRRS host genetics consortium ⬇️

scientific article published on June 3, 2011

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

scientific article (publication date: August 2008)

Putative regulatory factors associated with intramuscular fat content

scientific article (publication date: 2015)

RAPTR-SV: a hybrid method for the detection of structural variants

scientific article published on 16 February 2015

SNPlotz: a generic genome plot tool to aid the SNP association studies.

scientific article published on 23 July 2010

Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences

scientific article

Sire breed effect on beef longissimus mineral concentrations and their relationships with carcass and palatability traits

scientific article published on 30 March 2015

Skeletal Muscle Stem Cells from Animals I. Basic Cell Biology ⬇️

scientific article published on August 31, 2010

Structural and functional annotation of the porcine immunome

scientific article

Structure and regulation of the porcine skeletal alpha-actin-encoding gene.

scientific article published in November 1996

TACE release of TNF-alpha mediates mechanotransduction-induced activation of p38 MAPK and myogenesis.

scientific article

Ten simple rules to ruin a collaborative environment

scientific article published on 14 April 2022

The BioMart community portal: an innovative alternative to large, centralized data repositories

scientific article (publication date: July 2015)

The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish

scientific article

The genome sequence of taurine cattle: a window to ruminant biology and evolution

scientific article

Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2.

scientific article published on 30 April 2015

Transcriptional profiling of myostatin-knockout mice implicates Wnt signaling in postnatal skeletal muscle growth and hypertrophy.

scientific article published on 19 January 2006

Use of Genome Sequence Information for Meat Quality Trait QTL Mining for Causal Genes and Mutations on Pig Chromosome 17.

scientific article

Use of SNP genotyping to determine pedigree and breed composition of dairy cattle in Kenya ⬇️

scientific article published on October 1, 2010

Validation and further characterization of a major quantitative trait locus associated with host response to experimental infection with porcine reproductive and respiratory syndrome virus.

scientific article published on 5 August 2013

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection

scientific article published on 10 July 2015

Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle

scientific article (publication date: March 2014)

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