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List of works by Derek M Bickhart

A PLAG1 mutation contributed to stature recovery in modern cattle.

scientific article published on 7 December 2017

A Reference Genome Assembly of American Bison, Bison bison bison

scientific article published on 01 March 2021

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

scientific article published on 01 March 2021

A genome-wide association study of calf birth weight in Holstein cattle using single nucleotide polymorphisms and phenotypes predicted from auxiliary traits.

scientific article

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

scientific article published on 10 April 2014

A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells

scientific article published on 2 July 2014

Analysis of Population-Genetic Properties of Copy Number Variations

scientific article published on 01 January 2018

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size

scientific article published on 17 July 2017

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle

scientific article (publication date: 4 March 2014)

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

scientific article published on 02 August 2019

Author Correction: Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow

scientific article published on 28 May 2019

Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3

scientific article (publication date: 2014)

Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification ⬇️

scientific article published on March 26, 2013

Calling known variants and identifying new variants while rapidly aligning sequence data

scientific article published on 14 February 2019

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis

scientific article

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

scientific article published in Nature Communications

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data

scientific article

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations

scientific article published on 06 July 2016

Comparative analyses of sperm DNA methylomes among human, mouse and cattle provide insights into epigenomic evolution and complex traits

scientific article published on 24 March 2019

Comparative sequence alignment reveals River Buffalo genomic structural differences compared with cattle

scientific article published on 06 March 2018

Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.

scientific article published on 9 April 2018

Computational detection and experimental validation of segmental duplications and associated copy number variations in water buffalo ( Bubalus bubalis )

scientific article published on 07 February 2019

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor.

scientific article published on 23 February 2018

Copy number variation in the cattle genome.

scientific article published on 13 July 2012

Copy number variation of individual cattle genomes using next-generation sequencing

scientific article published on 2 February 2012

Correction to: Analysis of Population-Genetic Properties of Copy Number Variations

scientific article published on 01 January 2018

De novo assembly of haplotype-resolved genomes with trio binning

article

Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of US Holsteins

scientific article published on 19 July 2018

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle

scientific article published on 15 April 2016

Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing

scientific article published on 23 August 2018

Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology.

scientific article published on 13 July 2018

Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2

scientific article

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

scientific article (publication date: 2007)

Genome to Phenome: Improving Animal Health, Production, and Well-Being - A New USDA Blueprint for Animal Genome Research 2018-2027.

scientific article published on 16 May 2019

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.

scientific article

Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus

scientific article

Genomic characteristics of cattle copy number variations.

scientific article

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping

scientific article

Genomic evaluation of age at first calving.

scientific article

Genomic predictions combining SNP markers and copy number variations in Nellore cattle.

scientific article published on 5 June 2018

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle.

scientific article published on 18 September 2011

Genomic signatures reveal new evidences for selection of important traits in domestic cattle.

scientific article published on 26 November 2014

Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis.

scientific article published on 10 May 2018

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

scientific article published on 29 April 2020

Host-rumen microbe interactions may be leveraged to improve the productivity of dairy cows.

scientific article

Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle

scientific article

Identification of candidate transcription factor binding sites in the cattle genome.

scientific article

Increasing the number of single nucleotide polymorphisms used in genomic evaluation of dairy cattle.

scientific article published on 31 March 2016

Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia

scientific article

Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances

scientific article published on 22 August 2018

On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

scientific article

Population-genetic properties of differentiated copy number variations in cattle.

scientific article published on 23 March 2016

RAPTR-SV: a hybrid method for the detection of structural variants

scientific article published on 16 February 2015

Random Forests approach for identifying additive and epistatic single nucleotide polymorphisms associated with residual feed intake in dairy cattle.

scientific article published on 9 August 2013

Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression

scientific article

Reducing animal sequencing redundancy by preferentially selecting animals with low-frequency haplotypes.

scientific article published on 13 April 2016

Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan

scientific article

Scaffolding of long read assemblies using long range contact information

scientific article

Selecting sequence variants to improve genomic predictions for dairy cattle

scientific article published on 07 March 2017

Short communication: Use of young bulls in the United States

scientific article published on 05 March 2014

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

scientific article published on 6 March 2017

Statistical Detection of Genome Differences Based on CNV Segments

scientific article published on 01 January 2018

Systematic Profiling of Short Tandem Repeats in the Cattle Genome

scientific article published on January 2017

The antibody loci of the domestic goat (Capra hircus).

scientific article published on 23 October 2017

The challenges and importance of structural variation detection in livestock

scientific article published on 18 February 2014

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

scientific article published on 09 February 2017

Transcriptomes of Frankia sp. strain CcI3 in growth transitions

scientific article

Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow

scientific article published in Scientific Reports

Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures

scientific article published on 01 January 2018

Variants at the ASIP locus contribute to coat color darkening in Nellore cattle

scientific article published on 28 April 2021

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