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List of works by Johan Elf

An Evaluation of the Faster STORM Method for Super-resolution Microscopy

scholarly article published August 2014

Antibiotic susceptibility testing in less than 30 min using direct single-cell imaging

scientific article

Application of Noncanonical Amino Acids for Protein Labeling in a Genomically Recoded Escherichia coli

scientific article published on 24 October 2016

Arming the Neighborhood

scientific article published on 01 October 2016

Author Correction: tRNA tracking for direct measurements of protein synthesis kinetics in live cells

scientific article published on 01 July 2019

Bistable Bacterial Growth Rate in Response to Antibiotics with Low Membrane Permeability

scientific article published in Physical Review Letters

Bursting onto the scene? Exploring stochastic mRNA production in bacteria

article

Comparison of repressor and transcriptional attenuator systems for control of amino acid biosynthetic operons

scientific article

Contact-dependent growth inhibition induces high levels of antibiotic-tolerant persister cells in clonal bacterial populations

Costs and constraints from time-delayed feedback in small gene regulatory motifs

scientific article

DNA surface exploration and operator bypassing during target search

scientific article published on 24 June 2020

Delay-induced anomalous fluctuations in intracellular regulation

scientific article published on 9 August 2011

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation

scientific article

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

scientific article

Fast evaluation of fluctuations in biochemical networks with the linear noise approximation

scientific article

High-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking

scientific article published on 24 December 2012

Hypothesis: Homologous Recombination Depends on Parallel Search

scientific article published on 01 October 2016

In situ genotyping of a pooled strain library after characterizing complex phenotypes.

scientific article published on 17 October 2017

Kinetics of dCas9 target search in Escherichia coli

scientific article published on 28 September 2017

Lost in presumption: stochastic reactions in spatial models

scientific article published in December 2012

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit

scientific article published on 7 October 2012

Nanometer resolution imaging and tracking of fluorescent molecules with minimal photon fluxes

scientific article

Near-critical behavior of aminoacyl-tRNA pools in E. coli at rate-limiting supply of amino acids

scientific article published on 22 October 2004

Near-critical phenomena in intracellular metabolite pools

scientific article

Noise-induced Min phenotypes in E. coli

scientific article

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis

scientific article

Over expression of a tRNA(Leu) isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

scientific article published on 5 October 2005

Pointwise error estimates in localization microscopy

scientific article published on 3 May 2017

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product

scientific article published on 20 July 2012

Probing transcription factor dynamics at the single-molecule level in a living cell ⬇️

scientific article

RNAs actively cycle on the Sm-like protein Hfq.

scientific article published on December 2010

Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging

scientific article

Selective charging of tRNA isoacceptors explains patterns of codon usage

scientific article

Selective charging of tRNA isoacceptors induced by amino-acid starvation

scientific article

Simulated single molecule microscopy with SMeagol

scientific article

Single molecule approaches to transcription factor kinetics in living cells

scientific article published on December 2009

Single molecule methods with applications in living cells

scientific article published on 08 April 2013

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40 ⬇️

scientific article published on December 14, 2011

Single-molecule investigations of the stringent response machinery in living bacterial cells

scientific article

Single-particle tracking reveals that free ribosomal subunits are not excluded from the Escherichia coli nucleoid

scientific article

Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases

scientific article

Staying Clear of the Dragons

scientific article published on 27 April 2016

Stochastic reaction-diffusion kinetics in the microscopic limit

scientific article

Stochastic reaction-diffusion processes with embedded lower-dimensional structures

scientific article published on 26 October 2013

Stochastic reaction-diffusion simulation with MesoRD.

scientific article

Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI.

scientific article

Studying transcriptional interactions in single cells at sufficient resolution

scientific article

Systems Biology: Nobel Symposium 146.

scientific article

Systems biology is taking off.

scientific article

The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A Site

scientific article published on 01 January 2003

The Logic of Life

scientific article

The Synchronization of Replication and Division Cycles in Individual E. coli Cells

scientific article published in July 2016

The lac repressor displays facilitated diffusion in living cells

scientific article

Time-resolved imaging-based CRISPRi screening

scientific article published on 18 November 2019

Transcription factor binding kinetics constrain noise suppression via negative feedback

scientific article published in January 2013

Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models

scientific article

Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories

scientific article published on 21 June 2018

Variational algorithms for analyzing noisy multi-state diffusion trajectories

scholarly article published 8 March 2018

What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation?

scientific article

What matters for lac repressor search in vivo--sliding, hopping, intersegment transfer, crowding on DNA or recognition?

scientific article

tRNA tracking for direct measurements of protein synthesis kinetics in live cells

article by Ivan L Volkov et al published June 2018 in Nature Chemical Biology

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