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List of works by Seth J. Carbon

A Measure of Open Data: A Metric and Analysis of Reusable Data Practices in Biomedical Data Resources

scholarly article published 16 March 2018

A method for increasing expressivity of Gene Ontology annotations using a compositional approach

scientific article

AmiGO: online access to ontology and annotation data

scientific article (publication date: 15 January 2009)

An analysis and metric of reusable data licensing practices for biomedical resources

Arachne: an OWL RL Reasoner Applied to Gene Ontology Causal Activity Models (and Beyond)

scientific article published in proceedings of the iswc 2018 posters & demonstrations, industry and blue sky ideas tracks

BioJS: an open source standard for biological visualisation - its status in 2014

scientific article

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

scientific article published on 28 October 2021

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems

scientific article published on 01 October 2019

Gene Ontology annotations and resources

scientific article

Get GO! Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools

scientific article

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

scientific article published on 01 October 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 18 August 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

scientific article published on 9 November 2020

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

preprint published in 2023

Navigating the Phenotype Frontier: The Monarch Initiative

scientific article

Navigating the phenotype frontier: The Monarch Initiative

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

scientific article published on 13 October 2021

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies

preprint published on 06 July 2022

Reactome and the Gene Ontology: digital convergence of data resources

scientific article

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns

scientific article published on 02 September 2020

The Gene Ontology knowledgebase in 2023

scientific article published in 2023

The Human Phenotype Ontology in 2024: phenotypes around the world

scientific article published in 2023

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article published on 01 January 2020

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

The Monarch Initiative: Insights across species reveal human disease mechanisms

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

scientific article

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

scientific article

modMine: flexible access to modENCODE data

scientific article

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