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List of works by David A Sivak

A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota

scientific article published in 2023

Allocating and Splitting Free Energy to Maximize Molecular Machine Flux.

scientific article published in January 2018

Allocating dissipation across a molecular machine cycle to maximize flux

scientific article published on 3 October 2017

Breaking time-reversal symmetry for ratchet models of molecular machines

scientific article published on 01 June 2019

Connections between efficient control and spontaneous transitions in an Ising model

scientific article published in 2022

Consequences of local inter-strand dehybridization for large-amplitude bending fluctuations of double-stranded DNA.

scientific article published in January 2012

Controlling DNA capture and propagation through artificial nanopores

scientific article published on 18 August 2007

E pluribus unum, no more: from one crystal, many conformations

scientific article

Effective dissipation: Breaking time-reversal symmetry in driven microscopic energy transmission ⬇️

scientific article published on 30 September 2016

Energy Dissipation and Information Flow in Coupled Markovian Systems

scientific article published on 14 September 2018

Environmental statistics and optimal regulation

scientific article (publication date: September 2014)

Geometry of thermodynamic control ⬇️

scientific article published on October 26, 2012

Multidimensional minimum-work control of a 2D Ising model

scientific article published in 2022

Near-Equilibrium Measurements of Nonequilibrium Free Energy ⬇️

scientific article published on 09 April 2012

Optical measurement of mechanical forces inside short DNA loops

scientific article

Optimal control of rotary motors

scientific article published on 01 January 2019

Optimal control of transitions between nonequilibrium steady states

scientific article

Performance limits of information engines

scientific article published on 21 May 2024

Probing the conformational distributions of subpersistence length DNA.

scientific article published on September 2009

Quantifying Configuration-Sampling Error in Langevin Simulations of Complex Molecular Systems

scientific article published on 26 April 2018

Skewed thermodynamic geometry and optimal free energy estimation

scientific article published on 01 December 2020

Theory of Nonequilibrium Free Energy Transduction by Molecular Machines

scientific article published on 14 August 2019

Thermodynamic geometry of minimum-dissipation driven barrier crossing. ⬇️

scientific article published on 3 November 2016

Thermodynamic metrics and optimal paths ⬇️

scientific article published on 08 May 2012

Thermodynamics of Prediction ⬇️

scientific article published on September 19, 2012

Time step rescaling recovers continuous-time dynamical properties for discrete-time Langevin integration of nonequilibrium systems.

scientific article

Transcription factor competition allows embryonic stem cells to distinguish authentic signals from noise

scientific article

Using a system's equilibrium behavior to reduce its energy dissipation in nonequilibrium processes

scientific article published on 13 March 2019

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