List of works - Daniel Barry Roche

Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods

scientific article published on 27 July 2017

An assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life

scientific article published on 5 October 2015

Assessing the quality of modelled 3D protein structures using the ModFOLD server.

scientific article

Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method ⬇️

scientific article published on August 30, 2011

Correction: Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules

scientific article published on 5 December 2017

DisProt 7.0: a major update of the database of disordered proteins

scientific article published on 13 December 2016

DisProt 7.0: a major update of the database of disordered proteins.

scientific article

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

scientific article

FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions

scientific article (publication date: 2012)

Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules

scientific article published on 17 October 2017

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

scientific article published on 15 May 2012

In silico Identification and Characterization of Protein-Ligand Binding Sites.

scientific article

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.

scientific article

Neurotoxicity of a Biopesticide Analog on Zebrafish Larvae at Nanomolar Concentrations

scientific article

Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods

scientific article

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

scientific article

TAPO: A combined method for the identification of tandem repeats in protein structures.

scientific article

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

The FunFOLD2 server for the prediction of protein-ligand interactions

scientific article

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

scientific article

The ModFOLD4 server for the quality assessment of 3D protein models

scientific article published on 25 April 2013

The binding site distance test score: a robust method for the assessment of predicted protein binding sites.

scientific article

The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone

scientific article

The stability of Fbw7α in M-phase requires its phosphorylation by PKC.

scientific article published on 29 August 2017

Toolbox for Protein Structure Prediction.

scientific article

Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms.

scientific article published on 7 July 2017

List of works by Daniel Barry Roche

Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods

An assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life

Assessing the quality of modelled 3D protein structures using the ModFOLD server.

Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method ⬇️

Correction: Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules

DisProt 7.0: a major update of the database of disordered proteins

DisProt 7.0: a major update of the database of disordered proteins.

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions

Human babesiosis: Indication of a molecular mimicry between thrombospondin domains from a novel Babesia microti BmP53 protein and host platelets molecules

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

In silico Identification and Characterization of Protein-Ligand Binding Sites.

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences.

Neurotoxicity of a Biopesticide Analog on Zebrafish Larvae at Nanomolar Concentrations

Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

TAPO: A combined method for the identification of tandem repeats in protein structures.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

The FunFOLD2 server for the prediction of protein-ligand interactions

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

The ModFOLD4 server for the quality assessment of 3D protein models

The binding site distance test score: a robust method for the assessment of predicted protein binding sites.

The enzymatic nature of an anonymous protein sequence cannot reliably be inferred from superfamily level structural information alone

The stability of Fbw7α in M-phase requires its phosphorylation by PKC.

Toolbox for Protein Structure Prediction.

Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms.