List of works - Brigita Urbanc

A computational model for the loss of neuronal organization in microcolumns

scientific article

A statistically based density map method for identification and quantification of regional differences in microcolumnarity in the monkey brain

scientific article published in February 2005

Ab initio discrete molecular dynamics approach to protein folding and aggregation

scientific article published on January 2006

Age-related reduction in microcolumnar structure correlates with cognitive decline in ventral but not dorsal area 46 of the rhesus monkey

scientific article

Age-related reduction in microcolumnar structure in area 46 of the rhesus monkey correlates with behavioral decline

scholarly article

Aggregation and disaggregation of senile plaques in Alzheimer disease

scientific article

Automated identification of neurons and their locations

scientific article published on June 2008

Aβ42 oligomers, but not fibrils, simultaneously bind to and cause damage to ganglioside-containing lipid membranes

scientific article published in October 2011

Computer simulations of Alzheimer's amyloid beta-protein folding and assembly

scientific article published on December 2006

Corrections to "Do Molecular Dynamics Force Fields Capture Conformational Dynamics of Alanine in Water?"

scientific article published on 05 August 2020

Description of microcolumnar ensembles in association cortex and their disruption in Alzheimer and Lewy body dementias

scholarly article

Dimer formation enhances structural differences between amyloid β-protein (1-40) and (1-42): an explicit-solvent molecular dynamics study

scientific article

Discrete Molecular Dynamics Study of Oligomer Formation by N-Terminally Truncated Amyloid β-Protein ⬇️

scientific article published on March 13, 2013

Do Molecular Dynamics Force Fields Capture Conformational Dynamics of Alanine in Water?

scientific article published on 11 December 2019

Dynamic feedback in an aggregation-disaggregation model

scientific article

Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein.

scientific article

Dynamics of plaque formation in Alzheimer's disease

scientific article

Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach

scientific article published on September 2006

Elucidating the Role of Hydroxylated Phenylalanine in the Formation and Structure of Cross-Linked Aβ Oligomers

scientific article published on 28 January 2019

Elucidation of insulin assembly at acidic and neutral pH: Characterization of low molecular weight oligomers.

scientific article published on 10 August 2017

Europium as an inhibitor of Amyloid-β(1-42) induced membrane permeation

scientific article

Folding events in the 21-30 region of amyloid beta-protein (Abeta) studied in silico

scientific article

Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study.

scientific article

Fully Atomistic Aβ40 and Aβ42 Oligomers in Water: Observation of Porelike Conformations

scientific article

Generating a model of the three-dimensional spatial distribution of neurons using density maps.

scientific article

Glycine in Water Favors the Polyproline II State

scientific article published on 29 July 2020

In silico study of amyloid beta-protein folding and oligomerization

scholarly article

Insights into Formation and Structure of Aβ Oligomers Cross-Linked via Tyrosines.

scientific article published on 8 May 2017

Insulin Inhibits Aβ42 Aggregation and Prevents Aβ42-Induced Membrane Disruption

scientific article published on 04 November 2019

Intrinsic Conformational Dynamics of Alanine in Water/Ethanol Mixtures: An Experiment-Driven Molecular Dynamics Study

scientific article published on 10 December 2020

Mechanistic investigation of the inhibition of Abeta42 assembly and neurotoxicity by Abeta42 C-terminal fragments

scientific article

Minimal model of self-assembly: emergence of diversity and complexity.

scientific article

Molecular dynamics simulation of amyloid beta dimer formation

scientific article published on October 2004

Neuron recognition by parallel Potts segmentation

scientific article

Neurotoxic effects of thioflavin S-positive amyloid deposits in transgenic mice and Alzheimer's disease

scientific article

Plaque-induced neurite abnormalities: implications for disruption of neural networks in Alzheimer's disease

scientific article

Role of electrostatic interactions in amyloid beta-protein (A beta) oligomer formation: a discrete molecular dynamics study

scientific article published on 16 February 2007

Solvent and mutation effects on the nucleation of amyloid beta-protein folding

scientific article

Stabilization of native amyloid β-protein oligomers by Copper and Hydrogen peroxide Induced Cross-linking of Unmodified Proteins (CHICUP).

scientific article published on 14 December 2015

Structural basis for Aβ1–42 toxicity inhibition by Aβ C-terminal fragments: discrete molecular dynamics study.

scientific article

pH-Independence of trialanine and the effects of termini blocking in short peptides: a combined vibrational, NMR, UVCD, and molecular dynamics study

scientific article

List of works by Brigita Urbanc

A computational model for the loss of neuronal organization in microcolumns

A statistically based density map method for identification and quantification of regional differences in microcolumnarity in the monkey brain

Ab initio discrete molecular dynamics approach to protein folding and aggregation

Age-related reduction in microcolumnar structure correlates with cognitive decline in ventral but not dorsal area 46 of the rhesus monkey

Age-related reduction in microcolumnar structure in area 46 of the rhesus monkey correlates with behavioral decline

Aggregation and disaggregation of senile plaques in Alzheimer disease

Automated identification of neurons and their locations

Aβ42 oligomers, but not fibrils, simultaneously bind to and cause damage to ganglioside-containing lipid membranes

Computer simulations of Alzheimer's amyloid beta-protein folding and assembly

Corrections to "Do Molecular Dynamics Force Fields Capture Conformational Dynamics of Alanine in Water?"

Description of microcolumnar ensembles in association cortex and their disruption in Alzheimer and Lewy body dementias

Dimer formation enhances structural differences between amyloid β-protein (1-40) and (1-42): an explicit-solvent molecular dynamics study

Discrete Molecular Dynamics Study of Oligomer Formation by N-Terminally Truncated Amyloid β-Protein ⬇️

Do Molecular Dynamics Force Fields Capture Conformational Dynamics of Alanine in Water?

Dynamic feedback in an aggregation-disaggregation model

Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein.

Dynamics of plaque formation in Alzheimer's disease

Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach

Elucidating the Role of Hydroxylated Phenylalanine in the Formation and Structure of Cross-Linked Aβ Oligomers

Elucidation of insulin assembly at acidic and neutral pH: Characterization of low molecular weight oligomers.

Europium as an inhibitor of Amyloid-β(1-42) induced membrane permeation

Folding events in the 21-30 region of amyloid beta-protein (Abeta) studied in silico

Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study.

Fully Atomistic Aβ40 and Aβ42 Oligomers in Water: Observation of Porelike Conformations

Generating a model of the three-dimensional spatial distribution of neurons using density maps.

Glycine in Water Favors the Polyproline II State

In silico study of amyloid beta-protein folding and oligomerization

Insights into Formation and Structure of Aβ Oligomers Cross-Linked via Tyrosines.

Insulin Inhibits Aβ42 Aggregation and Prevents Aβ42-Induced Membrane Disruption

Intrinsic Conformational Dynamics of Alanine in Water/Ethanol Mixtures: An Experiment-Driven Molecular Dynamics Study

Mechanistic investigation of the inhibition of Abeta42 assembly and neurotoxicity by Abeta42 C-terminal fragments

Minimal model of self-assembly: emergence of diversity and complexity.

Molecular dynamics simulation of amyloid beta dimer formation

Neuron recognition by parallel Potts segmentation

Neurotoxic effects of thioflavin S-positive amyloid deposits in transgenic mice and Alzheimer's disease

Plaque-induced neurite abnormalities: implications for disruption of neural networks in Alzheimer's disease

Role of electrostatic interactions in amyloid beta-protein (A beta) oligomer formation: a discrete molecular dynamics study

Solvent and mutation effects on the nucleation of amyloid beta-protein folding

Stabilization of native amyloid β-protein oligomers by Copper and Hydrogen peroxide Induced Cross-linking of Unmodified Proteins (CHICUP).

Structural basis for Aβ1–42 toxicity inhibition by Aβ C-terminal fragments: discrete molecular dynamics study.

pH-Independence of trialanine and the effects of termini blocking in short peptides: a combined vibrational, NMR, UVCD, and molecular dynamics study