List of works - Yutaka Saito

Adipose-derived mesenchymal stem cells differentiate into heterogeneous cancer-associated fibroblasts in a stroma-rich xenograft model

scientific article published on 25 February 2021

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds

scientific article

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions

scientific article published on 13 January 2014

Brief exposure to small molecules allows induction of mouse embryonic fibroblasts into neural crest-like precursors

scientific article

CodonAdjust: a software for in silico design of a mutagenesis library with specific amino acid profiles

scientific article published on 24 July 2020

Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells

scientific article published on 19 December 2019

Convolutional neural network based on SMILES representation of compounds for detecting chemical motif

scientific article published on 31 December 2018

Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions

scientific article

Developing a codon optimization method for improved expression of recombinant proteins in actinobacteria.

scientific article published on 6 June 2019

Epigenetic silencing of V(D)J recombination is a major determinant for selective differentiation of mucosal-associated invariant t cells from induced pluripotent stem cells.

scientific article published on 27 March 2017

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures

scientific article

Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans.

scientific article published on 07 January 2009

Gradient-based optimization of hyperparameters for base-pairing profile local alignment kernels

scientific article published on 01 October 2009

Improved measurements of RNA structure conservation with generalized centroid estimators

scientific article published on 31 August 2011

Methylome, transcriptome, and PPAR(γ) cistrome analyses reveal two epigenetic transitions in fat cells

scientific article

Rational thermostabilisation of four-helix bundle dimeric de novo proteins

scientific article published on 06 April 2021

Ribosome Incorporation into Somatic Cells Promotes Lineage Transdifferentiation towards Multipotency

scientific article

Robust and accurate prediction of noncoding RNAs from aligned sequences

scientific article

List of works by Yutaka Saito

Adipose-derived mesenchymal stem cells differentiate into heterogeneous cancer-associated fibroblasts in a stroma-rich xenograft model

An efficient algorithm for de novo predictions of biochemical pathways between chemical compounds

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions

Brief exposure to small molecules allows induction of mouse embryonic fibroblasts into neural crest-like precursors

CodonAdjust: a software for in silico design of a mutagenesis library with specific amino acid profiles

Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells

Convolutional neural network based on SMILES representation of compounds for detecting chemical motif

Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions

Developing a codon optimization method for improved expression of recombinant proteins in actinobacteria.

Epigenetic silencing of V(D)J recombination is a major determinant for selective differentiation of mucosal-associated invariant t cells from induced pluripotent stem cells.

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures

Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans.

Gradient-based optimization of hyperparameters for base-pairing profile local alignment kernels

Improved measurements of RNA structure conservation with generalized centroid estimators

Methylome, transcriptome, and PPAR(γ) cistrome analyses reveal two epigenetic transitions in fat cells

Rational thermostabilisation of four-helix bundle dimeric de novo proteins

Ribosome Incorporation into Somatic Cells Promotes Lineage Transdifferentiation towards Multipotency

Robust and accurate prediction of noncoding RNAs from aligned sequences