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List of works by Timothy E Sweeney

A 33-mRNA Classifier Is Able to Produce Inflammopathic, Adaptive, and Coagulopathic Endotypes with Prognostic Significance: The Outcomes of Metabolic Resuscitation Using Ascorbic Acid, Thiamine, and Glucocorticoids in the Early Treatment of Sepsis (

scientific article published on 23 December 2020

A Multi-mRNA Host-Response Molecular Blood Test for the Diagnosis and Prognosis of Acute Infections and Sepsis: Proceedings from a Clinical Advisory Panel

scientific article published on 07 December 2020

A community approach to mortality prediction in sepsis via gene expression analysis.

scientific article published on 15 February 2018

A comprehensive time-course-based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set

scientific article (publication date: 13 May 2015)

A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections

scientific article published on 04 March 2020

A toll-like receptor 2 pathway regulates the Ppargc1a/b metabolic co-activators in mice with Staphylococcal aureus sepsis

scientific article

Author Correction: Circulating Biomarkers to Identify Responders in Cardiac Cell therapy.

scientific article published on 6 March 2018

Benchmarking Sepsis Gene Expression Diagnostics Using Public Data.

scientific article

Blood transcriptional signatures for tuberculosis diagnosis: a glass half-empty perspective - Authors' reply.

scientific article published in June 2016

Circulating Biomarkers to Identify Responders in Cardiac Cell therapy

scientific article published on 30 June 2017

Co-regulation of nuclear respiratory factor-1 by NFkappaB and CREB links LPS-induced inflammation to mitochondrial biogenesis.

scientific article published on 29 June 2010

Combined Mapping of Multiple clUsteriNg ALgorithms (COMMUNAL): A Robust Method for Selection of Cluster Number, K.

scientific article

Complement pathway amplifies caspase-11-dependent cell death and endotoxin-induced sepsis severity.

scientific article published on 03 October 2016

Comprehensive Validation of the FAIM3:PLAC8 Ratio in Time-matched Public Gene Expression Data

scientific article published in November 2015

Diagnosis of bacterial sepsis: why are tests for bacteremia not sufficient?

scientific article published on 27 August 2019

Differential regulation of the PGC family of genes in a mouse model of Staphylococcus aureus sepsis

scientific article

EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.

scientific article published on January 2016

Encouraging Mindfulness in Medical House Staff via Smartphone App: A Pilot Study

scientific article published on 9 August 2017

Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury

scientific article

Generalizable Biomarkers in Critical Care: Toward Precision Medicine

scientific article published on June 2017

Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis

scientific article

Heme Oxygenase-1 Couples Activation of Mitochondrial Biogenesis to Anti-inflammatory Cytokine Expression ⬇️

scientific article published on March 18, 2011

Hospital-acquired Pneumonia: A Host of Factors.

scientific article

Identifying Distinct Subgroups of ICU Patients: A Machine Learning Approach.

scientific article published on 21 June 2017

Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses

scientific article

Learning statistical models of phenotypes using noisy labeled training data

scientific article

Metabolic surgery: action via hormonal milieu changes, changes in bile acids or gut microbiota? A summary of the literature

scientific article

Methods to increase reproducibility in differential gene expression via meta-analysis

scientific article published on 14 September 2016

Multicohort Analysis of Whole-Blood Gene Expression Data Does Not Form a Robust Diagnostic for Acute Respiratory Distress Syndrome

scientific article published in February 2018

Pediatric Sepsis Endotypes Among Adults With Sepsis

scientific article published on 6 October 2017

Prediction of neurosurgical intervention after mild traumatic brain injury using the national trauma data bank.

scientific article

Risk Stratification and Prognosis in Sepsis: What Have We Learned from Microarrays?

scientific article published on 10 March 2016

Robust classification of bacterial and viral infections via integrated host gene expression diagnostics

scientific article published on July 2016

Septic Cardiomyopathy: Getting to the Heart of the Matter.

scientific article published on March 2017

Simplification of a Septic Shock Endotyping Strategy for Clinical Application

scientific article published in January 2017

Staphylococcus aureus Sepsis and Mitochondrial Accrual of the 8-Oxoguanine DNA Glycosylase DNA Repair Enzyme in Mice ⬇️

scientific article published on August 23, 2010

The authors reply

The authors reply

scientific article published in March 2017

The human gut microbiome: a review of the effect of obesity and surgically induced weight loss

scientific article

Unique transcriptomic response to sepsis is observed among patients of different age groups.

scientific article published on 8 September 2017

Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT.

scientific article

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