List of works by Jeremy Goecks

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

scientific article published on 03 April 2020

A long-read RNA-seq approach to identify novel transcripts of very large genes

scientific article published on 06 July 2020

A quick guide for building a successful bioinformatics community

scientific article

Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations.

scientific article published on 14 December 2016

Biology Needs Evolutionary Software Tools: Let's Build Them Right.

scientific article published on 23 April 2018

Cloud bursting galaxy: federated identity and access management

scientific article published on 01 January 2020

Dietary and flight energetic adaptations in a salivary gland transcriptome of an insectivorous bat.

scientific article published on 14 January 2014

Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Enabling precision medicine via standard communication of HTS provenance, analysis, and results

scientific article published on 31 December 2018

G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation

scientific article published on 04 June 2020

G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes

scientific article published on 01 November 2019

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine

scientific article published on 01 June 2021

Galaxy: A Gateway to Tools in e-Science

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

scientific article published on August 25, 2010

High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers

scientific article published on 02 July 2019

How Machine Learning Will Transform Biomedicine

scientific article published on 01 April 2020

Innate αβ T Cells Mediate Antitumor Immunity by Orchestrating Immunogenic Macrophage Programming

scientific article published on 02 July 2019

Integrative approach reveals composition of endoparasitoid wasp venoms

scientific article

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

scientific article published on 13 January 2022

Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analyses

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

scientific article published on 25 November 2021

Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies

scientific article published on 19 October 2021

NGS analyses by visualization with Trackster

scientific article

Next Generation Indexing for Genomic Intervals

article

Open pipelines for integrated tumor genome profiles reveal differences between pancreatic cancer tumors and cell lines

scientific article

PDTM-25. GENETIC SUSCEPTIBILITY AND EVOLUTION OF PEDIATRIC IDH-MUTANT INFILTRATING ASTROCYTOMAS

Parasitoid wasp venom SERCA regulates Drosophila calcium levels and inhibits cellular immunity

scientific article published on 20 May 2013

Practical Computational Reproducibility in the Life Sciences

scientific article published on 01 June 2018

Practical computational reproducibility in the life sciences

scientific article published on 10 October 2017

The Bioinformatics Open Source Conference (BOSC) 2013

scientific article

The Bioinformatics Open Source Conference (BOSC) 2013

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

scientific article

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

scientific article published in July 2018

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

scientific article published on 01 June 2020

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

a correction published on 25 June 2020

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

scientific article published on 01 April 2020

Turning pipe dreams into reality

scientific article

Web-based visual analysis for high-throughput genomics

scientific article