List of works by Jörg D Hoheisel

A community standard format for the representation of protein affinity reagents

scientific article

A genome-wide tethering screen reveals novel potential post-transcriptional regulators in Trypanosoma brucei

scientific article

A mammosphere formation RNAi screen reveals that ATG4A promotes a breast cancer stem-like phenotype.

scientific article

A transcriptome analysis of isoamyl alcohol-induced filamentation in yeast reveals a novel role for Gre2p as isovaleraldehyde reductase.

scientific article

A universally applicable process for preparing stoichiometrically 1:1 labelled functional proteins

scientific article

ABO blood groups and pancreatic cancer risk and survival: results from the PANcreatic Disease ReseArch (PANDoRA) consortium.

scientific article published on 12 February 2013

Affinity-based microarrays for proteomic analysis of cancer tissues.

scientific article published on January 2013

Alterations in cardiac DNA methylation in human dilated cardiomyopathy

scientific article

An RNAi screen of the RRM-domain proteins of Trypanosoma brucei

scholarly article published by Jörg D Hoheisel in 2009

Analysis conditions for proteomic profiling of mammalian tissue and cell extracts with antibody microarrays.

scientific article published in September 2010

Analysis of DNA-microarrays produced by inverse in situ oligonucleotide synthesis

scientific article published in March 2002

Analysis of DNA-protein interactions: from nitrocellulose filter binding assays to microarray studies.

scientific article published on 21 August 2010

Analysis of nutrient-dependent transcript variations in Neurospora crassa ⬇️

scientific article published on December 1, 2003

Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray

scientific article

Another side of genomics: synthetic biology as a means for the exploitation of whole-genome sequence information

scientific article

Antibody microarray-based profiling of complex specimens: systematic evaluation of labeling strategies

scientific article

Antibody microarrays: an evaluation of production parameters

scientific article

Antibody microarrays: promises and problems.

scientific article

Antibody microarrays: the crucial impact of mass transport on assay kinetics and sensitivity

scientific article

Array-based analysis of genomic DNA methylation patterns of the tumour suppressor gene p16INK4A promoter in colon carcinoma cell lines

scientific article

Arrayed primer extension on in situ synthesized 5'-->3' oligonucleotides in microchannels

scientific article

Assessment and optimisation of normalisation methods for dual-colour antibody microarrays ⬇️

scientific article

Berberine inhibits cell growth and mediates caspase-independent cell death in human pancreatic cancer cells.

scientific article

Boc-SPPS: Compatible Linker for the Synthesis of Peptide o-Aminoanilides

scientific article published on 24 December 2015

COMBO-FISH enables high precision localization microscopy as a prerequisite for nanostructure analysis of genome loci

scientific article published on 21 October 2010

CRISPR RNA-guided FokI nucleases repair a PAH variant in a phenylketonuria model

scientific article published on 27 October 2016

Cardiac ankyrin repeat protein, a negative regulator of cardiac gene expression, is augmented in human heart failure

scientific article

Clinical proteomics: promises, challenges and limitations of affinity arrays

scientific article

Combined DNA methylation and gene expression profiling in gastrointestinal stromal tumors reveals hypomethylation ofSPP1as an independent prognostic factor

article

Comparison of the tumor cell secretome and patient sera for an accurate serum-based diagnosis of pancreatic ductal adenocarcinoma

scientific article published on 02 January 2017

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

scientific article

Concurrent epigenetic silencing of wnt/β-catenin pathway inhibitor genes in B cell chronic lymphocytic leukaemia.

scientific article

Copying Life: Synthesis of an Enzymatically Active Mirror-Image DNA-Ligase Made of D-Amino Acids

scientific article published on 14 March 2019

Correction of PCR-bias in quantitative DNA methylation studies by means of cubic polynomial regression ⬇️

scientific article

Correction: The miRNA and mRNA Signatures of Peripheral Blood Cells in Humans Infected with Trypanosoma brucei gambiense.

scientific article

Corrigendum to “Functional analysis of Trypanosoma brucei PUF1” [Mol. Biochem. Parasitol. 150 (2006) 340–349]

scholarly article published in Molecular and Biochemical Parasitology

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

scientific article

DNA microarray analysis of pancreatic malignancies

scientific article

DNA microarray preparation by light-controlled in situ synthesis.

scientific article

DNA-probes for the highly sensitive identification of single nucleotide polymorphism using single-molecule spectroscopy

scientific article published on 20 March 2007

Decoding pooled RNAi screens by means of barcode tiling arrays

scientific article

Definition of a serum marker panel for glioblastoma discrimination and identification of Interleukin 1β in the microglial secretome as a novel mediator of endothelial cell survival induced by C-reactive protein.

scientific article published on 28 July 2015

Depletion of RAD17 sensitizes pancreatic cancer cells to gemcitabine.

scientific article published on 17 May 2013

Derivatization of glass and polypropylene surfaces

scientific article published on October 2004

Development of Helicobacter pylori Whole-Proteome Arrays and Identification of Serologic Biomarkers for Noncardia Gastric Cancer in the MCC-Spain Study

scientific article published on 30 September 2020

Diagnosis of pancreatic ductal adenocarcinoma and chronic pancreatitis by measurement of microRNA abundance in blood and tissue

scientific article (publication date: 2012)

Diagnostic values of GHSR DNA methylation pattern in breast cancer

scientific article published on 17 August 2012

Differentially regulated miRNAs as prognostic biomarkers in the blood of primary CNS lymphoma patients

scientific article

Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection?

scientific article published on 26 November 2008

Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-related antibodies

scientific article

Early Epigenetic Downregulation of microRNA-192 Expression Promotes Pancreatic Cancer Progression

scientific article published on 23 May 2016

Epigenetically deregulated microRNA-375 is involved in a positive feedback loop with estrogen receptor alpha in breast cancer cells

scientific article

Establishment and characterization of a highly tumourigenic and cancer stem cell enriched pancreatic cancer cell line as a well defined model system

scientific article

Expression of DRD2 Is Increased in Human Pancreatic Ductal Adenocarcinoma and Inhibitors Slow Tumor Growth in Mice

scientific article published on 28 August 2016

Expression profiling of glial genes during Drosophila embryogenesis

scientific article published on 05 May 2006

Fluorescent sample labeling for DNA microarray analyses.

scientific article

Functional analysis of Trypanosoma brucei PUF1

scientific article published in 2006

Functional genomics of stress response in Pseudomonas putida KT2440.

scientific article published on June 2006

GHSR DNA hypermethylation is a common epigenetic alteration of high diagnostic value in a broad spectrum of cancers

scientific article published on February 2015

GHSR hypermethylation: a promising pan-cancer marker

scientific article published on January 2015

Gene expression profiling identifies novel key players involved in the cytotoxic effect of Artesunate on pancreatic cancer cells.

scientific article published on 22 April 2009

Gene expression regulatory networks in Trypanosoma brucei: insights into the role of the mRNA-binding proteome.

scientific article published on 10 March 2016

Generation of high density protein microarrays by cell-free in situ expression of unpurified PCR products

scientific article published on 5 July 2006

Genes and proteins differentially expressed during in vitro malignant transformation of bovine pancreatic duct cells

scientific article

Genome-wide analysis of the response to cell wall mutations in the yeast Saccharomyces cerevisiae.

scientific article

Genotypic resistance testing in HIV by arrayed primer extension

scientific article published on 18 January 2008

Glucose triggers different global responses in yeast, depending on the strength of the signal, and transiently stabilizes ribosomal protein mRNAs

scientific article published on May 2003

Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2(alpha) phosphorylation at Thr169

scientific article published on 19 August 2008

High throughput synthetic lethality screen reveals a tumorigenic role of adenylate cyclase in fumarate hydratase-deficient cancer cells

scientific article

High-definition DNA methylation profiles from breast and ovarian carcinoma cell lines with differing doxorubicin resistance

scientific article

Highly skewed distribution of miRNAs and proteins between colorectal cancer cells and their exosomes following Cetuximab treatment: biomolecular, genetic and translational implications.

scientific article published on 16 March 2014

Highly specific identification of single nucleic polymorphism in M. tuberculosis using smart probes and single-molecule fluorescence spectroscopy in combination with blocking oligonucleotides

scholarly article published 7 February 2008

Human papillomavirus type 16 E6 promotes retinoblastoma protein phosphorylation and cell cycle progression.

scientific article published on December 2004

Identification of malignancy factors by analyzing cystic tumors of the pancreas

scientific article published on 12 December 2008

Identification of novel biomarkers in chronic immune thrombocytopenia (ITP) by microarray-based serum protein profiling

scientific article

Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy

scientific article published on 26 July 2006

Identification of subspecies specific genes differentially expressed in procyclic forms of Trypanosoma brucei subspecies.

scientific article

Immunoassay-based proteome profiling of 24 pancreatic cancer cell lines.

scientific article

Immunoprofiling of Chlamydia trachomatis using whole-proteome microarrays generated by on-chip in situ expression.

scientific article

Impact of the secretome of activated pancreatic stellate cells on growth and differentiation of pancreatic tumour cells

In vivo activity and pharmacokinetics of nemorosone on pancreatic cancer xenografts

scientific article

Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data

scientific article

Interactions of CAF1-NOT complex components from Trypanosoma brucei

Intracerebral interleukin-10 injection modulates post-ischemic neuroinflammation: an experimental microarray study

scientific article published on 11 July 2014

Kinetics of antigen binding to antibody microspots: strong limitation by mass transport to the surface.

scientific article published in February 2006

Lack of Replication of Seven Pancreatic Cancer Susceptibility Loci Identified in Two Asian Populations

article

Late ischemic preconditioning of the myocardium alters the expression of genes involved in inflammatory response

scientific article

Manufacturing DNA microarrays from unpurified PCR products

scientific article published in August 2002

Melanoma miRNA trafficking controls tumour primary niche formation

scientific article published on 22 August 2016

Methods for analyzing and quantifying protein-protein interaction.

scientific article published on 06 January 2014

Methylisoindigo preferentially kills cancer stem cells by interfering cell metabolism via inhibition of LKB1 and activation of AMPK in PDACs

scientific article published on 04 February 2016

Micro RNA expression profiles in peripheral blood cells of rats that were experimentally infected with Trypanosoma congolense and different Trypanosoma brucei subspecies

scientific article published on 19 March 2015

Microarray analysis of nemorosone-induced cytotoxic effects on pancreatic cancer cells reveals activation of the unfolded protein response (UPR).

scientific article published on March 2011

Microarray data representation, annotation and storage

scientific article

Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis

scientific article

Microarray technology: beyond transcript profiling and genotype analysis

scientific article

Microcystic tubulopapillary carcinoma of the pancreas: a new tumor entity?

scientific article published on 11 March 2004

Microfluidic-based enzymatic on-chip labeling of miRNAs.

scientific article published on 20 August 2008

Molecular signatures associated with tumor-specific immune response in melanoma patients treated with dendritic cell-based immunotherapy.

scientific article published on 30 March 2018

Monitoring methylation changes in cancer

scientific article published on January 2007

Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays

scientific article published on 17 December 2001

Multiplex approaches in protein microarray technology.

scientific article

Neuromedin U is overexpressed in pancreatic cancer and increases invasiveness via the hepatocyte growth factor c-Met pathway

scientific article

New hairpin-structured DNA probes: alternatives to classical molecular beacons

Novel Autoantibody Signatures in Sera of Patients with Pancreatic Cancer, Chronic Pancreatitis and Autoimmune Pancreatitis: A Protein Microarray Profiling Approach

scientific article published on 31 March 2020

N⁶-Methyladenosine Landscape of Glioma Stem-Like Cells: METTL3 Is Essential for the Expression of Actively Transcribed Genes and Sustenance of the Oncogenic Signaling

article

Oncoproteomic profiling with antibody microarrays

scientific article

Optimal design of microarray immunoassays to compensate for kinetic limitations: theory and experiment.

scientific article

Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; analyzing variations in immune regulator genes of hay-fever samples

scientific article

P15. Profiling of neoplasms of the pancreas using microarray-technology

article published in 2006

PNA microarrays for hybridisation of unlabelled DNA samples ⬇️

scientific article published on October 1, 2003

Pancreatic cancer susceptibility loci and their role in survival

scientific article

Peptide nucleic acid microarrays

scientific article

Peptide nucleic acids on microarrays and other biosensors

scientific article

Personalised proteome analysis by means of protein microarrays made from individual patient samples

scientific article

Plasma protein analysis of patients with different B-cell lymphomas using high-content antibody microarrays

scientific article published in December 2013

Prediction of recurrence of non muscle-invasive bladder cancer by means of a protein signature identified by antibody microarray analyses.

scientific article published on 29 April 2014

Proteome variations in pancreatic stellate cells upon stimulation with proinflammatory factors

scientific article published on 2 October 2013

ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome

article

RNA-directed epigenomic reprogramming: an emerging principle of a more targeted cancer therapy?

scientific article published in November 2011

Replication and virus-induced transcriptome of HAdV-5 in normal host cells versus cancer cells--differences of relevance for adenoviral oncolysis

scientific article

Robust protein profiling with complex antibody microarrays in a dual-colour mode

scientific article published on 01 January 2011

Secretome profiling of apheresis platelet supernatants during routine storage via antibody-based microarray.

scientific article published on 28 July 2016

Secretome profiling with antibody microarrays

scientific article

Sed1p and Srl1p are required to compensate for cell wall instability in Saccharomyces cerevisiae mutants defective in multiple GPI-anchored mannoproteins

scientific article

Single-molecule detection on a protein-array assay platform for the exposure of a tuberculosis antigen

scientific article published on 16 February 2011

Single-step procedure for the isolation of proteins at near-native conditions from mammalian tissue for proteomic analysis on antibody microarrays.

scientific article

Small trypanosome RNA-binding proteins TbUBP1 and TbUBP2 influence expression of F-box protein mRNAs in bloodstream trypanosomes

scientific article published on 14 September 2007

Solid supports for microarray immunoassays

scientific article

Solid type clear cell carcinoma of the pancreas: differential diagnosis of an unusual case and review of the literature

scientific article published on 24 April 2007

Somatic mutations in exocrine pancreatic tumors: association with patient survival

scientific article

Specialized DNA arrays for the differentiation of pancreatic tumors.

scientific article published in November 2005

Spectrally resolved fluorescence lifetime imaging microscopy (SFLIM)--an appropriate method for imaging single molecules in living cells

scientific article

Strategy to sequence the genome of Corynebacterium glutamicum ATCC 13032: use of a cosmid and a bacterial artificial chromosome library

scientific article

Stratification of pancreatic tissue samples for molecular studies: RNA-based cellular annotation procedure

scientific article

Subcellular protein extraction from human pancreatic cancer tissues

scientific article

Synthesis of 5'-O-phosphoramidites with a photolabile 3'-O-protecting group

scientific article published on September 2004

Systematic interpretation of microarray data using experiment annotations

scientific article

Targeted next-generation sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA arrays

scientific article published on 29 October 2008

The RNA helicase DHH1 is central to the correct expression of many developmentally regulated mRNAs in trypanosomes

scientific article

The deubiquitinating enzyme USP5 promotes pancreatic cancer via modulating cell cycle regulators

scientific article published on 3 August 2017

The genome structure of Pseudomonas putida: high-resolution mapping and microarray analysis

scientific article published on 01 December 2002

The miRNA and mRNA Signatures of Peripheral Blood Cells in Humans Infected with Trypanosoma brucei gambiense

scientific article

The structural basis of nanobody unfolding reversibility and thermoresistance.

scientific article

The transcription factor FLI1 promotes cancer progression by affecting cell cycle regulation

scientific article published on 17 December 2019

The transcriptome of the colonial marine hydroid Hydractinia echinata

scientific article published on 3 December 2009

The transcriptomes of Trypanosoma brucei Lister 427 and TREU927 bloodstream and procyclic trypomastigotes.

scientific article published in February 2005

The yeast transcriptome in aerobic and hypoxic conditions: effects of hap1, rox1, rox3 and srb10 deletions.

scientific article

Therapeutic and diagnostic applications of nanoparticles

scientific article published on March 2011

Toxicogenomics for the prediction of toxicity related to herbs from traditional Chinese medicine.

scientific article published on 18 October 2010

Traditional Chinese medicines (TCMs) for molecular targeted therapies of tumours.

scientific article published on March 2010

Transcript profiling identifies novel key players mediating the growth inhibitory effect of NS-398 on human pancreatic cancer cells.

scientific article published on 20 October 2010

Transcriptional co-factor Transducin beta-like (TBL) 1 acts as a checkpoint in pancreatic cancer malignancy

scientific article

Transcriptional variations in the wider peritumoral tissue environment of pancreatic cancer

scientific article published on 6 October 2017

Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons

scientific article

Troglitazone induces differentiation in Trypanosoma brucei.

scientific article published on 15 March 2007

Use of complex DNA and antibody microarrays as tools in functional analyses

scientific article

Utilisation of antibody microarrays for the selection of specific and informative antibodies from recombinant library binders of unknown quality.

scientific article published on 17 December 2015

Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform

scientific article published on 20 September 2006

What's in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence

scientific article

miRNAs can be generally associated with human pathologies as exemplified for miR-144.

scientific article

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