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List of works by José F Muñoz

50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens

scientific article published on 19 November 2015

An oxindole efflux inhibitor potentiates azoles and impairs virulence in the fungal pathogen Candida auris

scientific article published on 22 December 2020

Best practices on the differential expression analysis of multi-species RNA-seq

publication published on 29 April 2021

Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species

scientific article published on 04 January 2022

Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris

scientific article published on 26 March 2021

Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans

scientific article published on 08 April 2019

Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single, Candida albicans infected macrophages

Differential PbP27 expression in the yeast and mycelial forms of the Paracoccidioides brasiliensis species complex.

scientific article

Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic

scientific article published on 18 November 2021

Draft Genome Sequences of Two Sporothrix schenckii Clinical Isolates Associated with Human Sporotrichosis in Colombia.

scientific article

Emergomyces: The global rise of new dimorphic fungal pathogens

scientific article published on 19 September 2019

Experimental evolution identifies adaptive aneuploidy as a mechanism of fluconazole resistance in Candida auris

scientific article published on 19 October 2020

From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity.

scientific article published on 21 February 2016

Genetic Analysis of Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance

scientific article published on 29 January 2019

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

scientific article published on 28 September 2016

Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi

scientific article published on 14 March 2018

Genome update of the dimorphic human pathogenic fungi causing paracoccidioidomycosis

scientific article

Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance

scientific article published on 5 April 2021

Genomic basis of multidrug-resistance, mating, and virulence in Candida auris and related emerging species

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

scientific article published in Nature Communications

Human Blastomycosis in South Africa Caused by Blastomyces percursus and Blastomyces emzantsi sp. nov., 1967 to 2014

scientific article published on 24 February 2020

Identification and Analysis of the Role of Superoxide Dismutases Isoforms in the Pathogenesis of Paracoccidioides spp.

scientific article

Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study

scientific article published on 23 October 2019

Inhibition of PbGP43 expression may suggest that gp43 is a virulence factor in Paracoccidioides brasiliensis.

scientific article

Involvement of the 90 kDa heat shock protein during adaptation of Paracoccidioides brasiliensis to different environmental conditions.

scientific article published on December 2012

Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris

scientific article published on 12 May 2020

Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales).

scientific article

Paracoccidioides brasiliensis PbP27 gene: knockdown procedures and functional characterization.

scientific article published on November 2013

Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses

scientific article

Pathways of Pathogenicity: Transcriptional Stages of Germination in the Fatal Fungal Pathogen

scientific article published on 26 September 2018

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia

scientific article published on 6 October 2015

The complex task of choosing a de novo assembly: lessons from fungal genomes.

scientific article published on 29 August 2014

The eukaryotic genome, its reads, and the unfinished assembly

scientific article published on 30 May 2013

Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses

scientific article published on 28 April 2020

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