List of works - Fuyi Li

An Interpretable Prediction Model for Identifying N7-Methylguanosine Sites Based on XGBoost and SHAP

scientific article published on 25 August 2020

Characterization of the Src-regulated kinome identifies SGK1 as a key mediator of Src-induced transformation

scientific article published in Nature Communications

Characterizing Secretion System Effector Proteins With Structure-Aware Graph Neural Networks and Pre-Trained Language Models

scientific article published in 2024

Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences

scientific article published on 11 November 2019

Computational identification of eukaryotic promoters based on cascaded deep capsule neural networks

scientific article published on 24 November 2020

Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework

scientific article published on 04 May 2020

Contrastive Graph Similarity Networks

scientific article published on 30 January 2023

DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites

scientific article published on 01 February 2020

DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions

scientific article published in 2022

Formator: predicting lysine formylation sites based on the most distant undersampling and safe-level synthetic minority oversampling

scientific article published on 05 December 2019

GlycoMine(struct): a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

scientific article published on 06 October 2016

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

scientific article published on 6 January 2015

MERITS: a web-based integrated <i>Mycobacterial</i> PE/PPE protein database

scientific article published in 2024

PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework

scientific article published on 30 January 2018

PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy.

scientific article

Prediction of Multiple Types of RNA Modifications via Biological Language Model

scientific article published on 08 June 2023

The flagellotropic bacteriophage YSD1 targets Salmonella Typhi with a Chi-like protein tail fibre

scientific article published on 09 October 2019

iFeature: a python package and web server for features extraction and selection from protein and peptide sequences.

scientific article published on 8 March 2018

List of works by Fuyi Li