List of works - Francesca De Filippis

A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota.

scientific article

A selected core microbiome drives the early stages of three popular italian cheese manufactures

scientific article

Advancing integration of data on food microbiome studies: FoodMicrobionet 3.1, a major upgrade of the FoodMicrobionet database

scientific article published on 11 June 2019

Altered gut microbiota and endocannabinoid system tone in vitamin D deficiency-mediated chronic pain

scientific article published on 03 April 2019

Animal rennets as sources of dairy lactic acid bacteria

scientific article published on 17 January 2014

Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice.

scientific article published on 7 September 2017

Attenuated Lactococcus lactis and Surface Bacteria as Tools for Conditioning the Microbiota and Driving the Ripening of Semisoft Caciotta Cheese

scientific article published on 18 February 2020

Coexistence of Lactic Acid Bacteria and Potential Spoilage Microbiota in a Dairy Processing Environment.

scientific article published on 4 September 2015

Coffee prevents fatty liver disease induced by a high-fat diet by modulating pathways of the gut-liver axis

scientific article published on 22 April 2019

Decarboxylase gene expression and cadaverine and putrescine production by Serratia proteamaculans in vitro and in beef

scientific article published on 04 June 2013

Diet influences the functions of the human intestinal microbiome

scientific article published on 06 March 2020

Dietary Interventions to Modulate the Gut Microbiome-How Far Away Are We From Precision Medicine

scientific article published on 01 September 2018

Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity.

scientific article published on 16 June 2017

Different Lactobacillus populations dominate in "Chorizo de León" manufacturing performed in different production plants

scientific article

Different temperatures select distinctive acetic acid bacteria species and promotes organic acids production during Kombucha tea fermentation

article

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

scientific article published on 21 February 2019

Draft Genome Sequences of the Aerobic Strains Lactobacillus gasseri AL3 and AL5.

scientific article published on 4 May 2017

Dynamics of bacterial communities and interaction networks in thawed fish fillets during chilled storage in air

scientific article published on 16 January 2019

Editorial: interventions in infantile colic - can efficacy be attributed to treatment or to time? Authors' reply

scientific article published on 01 February 2020

Exploring the sources of bacterial spoilers in beefsteaks by culture-independent high-throughput sequencing

scientific article

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

scientific article published in November 2023

FoodMicrobionet: A database for the visualisation and exploration of food bacterial communities based on network analysis.

scientific article published on 9 December 2015

From an imbalance to a new imbalance: Italian-style gluten-free diet alters the salivary microbiota and metabolome of African celiac children

scientific article published on 18 December 2015

Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy

scientific article published in Scientific Reports

Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype

scientific article published in PLoS ONE

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome

scientific article published on 28 September 2015

Impact of Lactobacillus curvatus 54M16 on microbiota composition and growth of Listeria monocytogenes in fermented sausages.

scientific article

Influence of microbial communities on the chemical and sensory features of Falanghina sweet passito wines

scientific article published on 19 November 2018

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

scientific article published on 25 May 2020

Large-scale mapping of microbial diversity in artisanal Brazilian cheeses

scientific article published on 26 December 2018

Linking bacterial and eukaryotic microbiota to litter chemistry: Combining next generation sequencing with 13C CPMAS NMR spectroscopy

scientific article published on 15 November 2018

Marcus Leonardo Boyd

scientific article published on 26 May 2021

Metabolic Profiling and Cold-Starvation Stress Response of Oxygen-Tolerant Lactobacillus gasseri Strains Cultured in Batch Bioreactor

scientific article published on 15 July 2019

Metabolic gene-targeted monitoring of non-starter lactic acid bacteria during cheese ripening

scientific article published on 6 July 2017

Metagenomics insights into food fermentations

scientific article

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate.

scientific article

Microbial community dynamics in thermophilic undefined milk starter cultures.

scientific article published on 19 October 2015

Microbial ecology dynamics during rye and wheat sourdough preparation

scientific article

Microbiota of an Italian Grana-Like Cheese during Manufacture and Ripening, Unraveled by 16S rRNA-Based Approaches.

scientific article published on 22 April 2016

Monitoring the mycobiota during Greco di Tufo and Aglianico wine fermentation by 18S rRNA gene sequencing.

scientific article

NaOH-debittering induces changes in bacterial ecology during table olives fermentation.

scientific article

Organic cultivation of Triticum turgidum subsp. durum is reflected in the flour-sourdough fermentation-bread axis

scientific article

Overlap of Spoilage-Associated Microbiota between Meat and the Meat Processing Environment in Small-Scale and Large-Scale Retail Distributions

scientific article published on 29 April 2016

Polymorphism of the phosphoserine phosphatase gene in Streptococcus thermophilus and its potential use for typing and monitoring of population diversity.

scientific article

Profiling white wine seed vinegar bacterial diversity through viable counting, metagenomic sequencing and PCR-DGGE

scientific article published on 20 July 2018

Recent Past, Present, and Future of the Food Microbiome

scientific article published on 18 January 2018

Salivary microbiota and metabolome associated with celiac disease

scientific article

Specific Signatures of the Gut Microbiota and Increased Levels of Butyrate in Children Treated with Fermented Cow's Milk Containing Heat-Killed Lactobacillus paracasei CBA L74.

scientific article published on 21 July 2017

Strain-Level Diversity Analysis of Pseudomonas fragi after In Situ Pangenome Reconstruction Shows Distinctive Spoilage-Associated Metabolic Traits Clearly Selected by Different Storage Conditions.

scientific article published on 13 December 2018

Structure of association networks in food bacterial communities.

scientific article published on 22 December 2017

The Intestinal Microbiota of Hermetia illucens Larvae Is Affected by Diet and Shows a Diverse Composition in the Different Midgut Regions

scientific article published on 09 January 2019

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

scientific article published on 10 October 2019

The microbiota of high-moisture mozzarella cheese produced with different acidification methods.

scientific article published on 9 September 2015

The same microbiota and a potentially discriminant metabolome in the saliva of omnivore, ovo-lacto-vegetarian and Vegan individuals

scientific article

The therapeutic efficacy of Bifidobacterium animalis subsp. lactis BB-12® in infant colic: A randomised, double blind, placebo-controlled trial

scientific article published on 03 December 2019

Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns

scientific article published on 21 October 2016

rRNA-based monitoring of the microbiota involved in Fontina PDO cheese production in relation to different stages of cow lactation

scientific article

List of works by Francesca De Filippis

A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota.

A selected core microbiome drives the early stages of three popular italian cheese manufactures

Advancing integration of data on food microbiome studies: FoodMicrobionet 3.1, a major upgrade of the FoodMicrobionet database

Altered gut microbiota and endocannabinoid system tone in vitamin D deficiency-mediated chronic pain

Animal rennets as sources of dairy lactic acid bacteria

Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice.

Attenuated Lactococcus lactis and Surface Bacteria as Tools for Conditioning the Microbiota and Driving the Ripening of Semisoft Caciotta Cheese

Coexistence of Lactic Acid Bacteria and Potential Spoilage Microbiota in a Dairy Processing Environment.

Coffee prevents fatty liver disease induced by a high-fat diet by modulating pathways of the gut-liver axis

Decarboxylase gene expression and cadaverine and putrescine production by Serratia proteamaculans in vitro and in beef

Diet influences the functions of the human intestinal microbiome

Dietary Interventions to Modulate the Gut Microbiome-How Far Away Are We From Precision Medicine

Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity.

Different Lactobacillus populations dominate in "Chorizo de León" manufacturing performed in different production plants

Different temperatures select distinctive acetic acid bacteria species and promotes organic acids production during Kombucha tea fermentation

Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

Draft Genome Sequences of the Aerobic Strains Lactobacillus gasseri AL3 and AL5.

Dynamics of bacterial communities and interaction networks in thawed fish fillets during chilled storage in air

Editorial: interventions in infantile colic - can efficacy be attributed to treatment or to time? Authors' reply

Exploring the sources of bacterial spoilers in beefsteaks by culture-independent high-throughput sequencing

Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

FoodMicrobionet: A database for the visualisation and exploration of food bacterial communities based on network analysis.

From an imbalance to a new imbalance: Italian-style gluten-free diet alters the salivary microbiota and metabolome of African celiac children

Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy

Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype

High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome

Impact of Lactobacillus curvatus 54M16 on microbiota composition and growth of Listeria monocytogenes in fermented sausages.

Influence of microbial communities on the chemical and sensory features of Falanghina sweet passito wines

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

Large-scale mapping of microbial diversity in artisanal Brazilian cheeses

Linking bacterial and eukaryotic microbiota to litter chemistry: Combining next generation sequencing with 13C CPMAS NMR spectroscopy

Marcus Leonardo Boyd

Metabolic Profiling and Cold-Starvation Stress Response of Oxygen-Tolerant Lactobacillus gasseri Strains Cultured in Batch Bioreactor

Metabolic gene-targeted monitoring of non-starter lactic acid bacteria during cheese ripening

Metagenomics insights into food fermentations

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate.

Microbial community dynamics in thermophilic undefined milk starter cultures.

Microbial ecology dynamics during rye and wheat sourdough preparation

Microbiota of an Italian Grana-Like Cheese during Manufacture and Ripening, Unraveled by 16S rRNA-Based Approaches.

Monitoring the mycobiota during Greco di Tufo and Aglianico wine fermentation by 18S rRNA gene sequencing.

NaOH-debittering induces changes in bacterial ecology during table olives fermentation.

Organic cultivation of Triticum turgidum subsp. durum is reflected in the flour-sourdough fermentation-bread axis

Overlap of Spoilage-Associated Microbiota between Meat and the Meat Processing Environment in Small-Scale and Large-Scale Retail Distributions

Polymorphism of the phosphoserine phosphatase gene in Streptococcus thermophilus and its potential use for typing and monitoring of population diversity.

Profiling white wine seed vinegar bacterial diversity through viable counting, metagenomic sequencing and PCR-DGGE

Recent Past, Present, and Future of the Food Microbiome

Salivary microbiota and metabolome associated with celiac disease

Specific Signatures of the Gut Microbiota and Increased Levels of Butyrate in Children Treated with Fermented Cow's Milk Containing Heat-Killed Lactobacillus paracasei CBA L74.

Strain-Level Diversity Analysis of Pseudomonas fragi after In Situ Pangenome Reconstruction Shows Distinctive Spoilage-Associated Metabolic Traits Clearly Selected by Different Storage Conditions.

Structure of association networks in food bacterial communities.

The Intestinal Microbiota of Hermetia illucens Larvae Is Affected by Diet and Shows a Diverse Composition in the Different Midgut Regions

The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

The microbiota of high-moisture mozzarella cheese produced with different acidification methods.

The same microbiota and a potentially discriminant metabolome in the saliva of omnivore, ovo-lacto-vegetarian and Vegan individuals

The therapeutic efficacy of Bifidobacterium animalis subsp. lactis BB-12® in infant colic: A randomised, double blind, placebo-controlled trial

Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns

rRNA-based monitoring of the microbiota involved in Fontina PDO cheese production in relation to different stages of cow lactation