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List of works by Rhys A Farrer

A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands

scientific article published on 12 November 2019

Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris.

scientific article published on 31 May 2018

Batrachochytrium salamandrivorans

scientific article published on 22 May 2019

Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity.

scientific article

Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon

scientific article published on 25 August 2015

De novoassembly of thePseudomonas syringaepv.syringaeB728a genome using Illumina/Solexa short sequence reads

scientific article published on 09 December 2008

Describing Genomic and Epigenomic Traits Underpinning Emerging Fungal Pathogens.

scientific article published on 28 October 2017

Development and worldwide use of a non-lethal and minimal population-level impact protocols for the isolation of chytrids from amphibians

Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi.

scientific article

Evaluation of High-Resolution Melting for Rapid Differentiation of Phytophthora Hybrids and Their Parental Species

scientific article published on 29 July 2019

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

scientific article published on 28 September 2016

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii ⬇️

scientific article

Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen

scientific article

Genome evolution following host jumps in the Irish potato famine pathogen lineage

scientific article published in December 2010

Genomic basis of multidrug-resistance, mating, and virulence in Candida auris and related emerging species

Genomic epidemiology of a case cluster in Glasgow, Scotland, 2018

scientific article published in March 2021

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

scientific article published on 29 March 2018

Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi

scientific article

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

scientific article published in Nature Communications

Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen

article published in the Proceedings of the National Academy of Sciences of the United States of America

HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes

scientific article published on 22 November 2021

Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans.

scientific article

MARDy: Mycology Antifungal Resistance Database

scientific article published on 01 September 2018

Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii

scientific article published on 07 March 2017

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii

scientific article published on December 2016

Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage.

scientific article

Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes, and drug targets

scientific article published on 01 May 2022

Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains

scientific article published on 02 April 2019

Recent Asian origin of chytrid fungi causing global amphibian declines.

scientific article

Revealing the genome of the microsporidian <i>Vairimorpha bombi</i>, a potential driver of bumble bee declines in North America

scientific article published in 2024

Synima: a Synteny imaging tool for annotated genome assemblies.

scientific article

Ten things to know about oomycete effectors.

scientific article

Transcriptional Heterogeneity of VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways

scientific article published in 2018

Transcriptional heterogeneity of Cryptococcus gattii VGII compared with non-VGII lineages underpins key pathogenicity pathways

Transmission of Hypervirulence traits via sexual reproduction within and between lineages of the human fungal pathogen cryptococcus gattii

scientific article

Two-speed genome evolution drives pathogenicity in fungal pathogens of animals

scientific article published on 10 January 2023

Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects

scientific article published on January 2013

Wildlife disease. Recent introduction of a chytrid fungus endangers Western Palearctic salamanders

scientific article

Zinc Cluster Transcription Factors Alter Virulence in Candida albicans

scientific article published on 07 December 2016

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