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List of works by Pablo Carbonell

A Sense of Balance: Experimental Investigation and Modeling of a Malonyl-CoA Sensor in Escherichia coli.

scientific article

A retrosynthetic biology approach to metabolic pathway design for therapeutic production

scientific article

A retrosynthetic biology approach to therapeutics: from conception to delivery ⬇️

scientific article published on 02 April 2012

An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals

scientific article published on 08 June 2018

Bioinformatics for the synthetic biology of natural products: integrating across the Design-Build-Test cycle

scientific article published on 17 May 2016

Compound toxicity screening and structure-activity relationship modeling in Escherichia coli

scientific article published on 9 November 2011

Computational protein design methods for synthetic biology.

scientific article

Computer-aided design for metabolic engineering

scientific article published on 02 April 2014

Editorial - Synthetic Biology: Engineering Complexity and Refactoring Cell Capabilities

scientific article published on 21 August 2015

Energetic determinants of protein binding specificity: insights into protein interaction networks

scientific article published in April 2009

Engineering antibiotic production and overcoming bacterial resistance ⬇️

scientific article published on June 10, 2011

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

scientific article

Enzyme Discovery: Enzyme Selection and Pathway Design

scientific article published on 01 January 2018

Exploring brand-name drug mentions on Twitter for pharmacovigilance

scientific article published on January 2015

Extended Metabolic Space Modeling

scientific article published in January 2018

Fuzzy Logic Applications in Control Theory and Systems Biology

Hepatotoxicity Prediction by Systems Biology Modeling of Disturbed Metabolic Pathways Using Gene Expression Data

article

Hepatotoxicity prediction by systems biology modeling of disturbed metabolic pathways using gene expression data

scientific article

Highly multiplexed, fast and accurate nanopore sequencing for verification of synthetic DNA constructs and sequence libraries

scientific article published on 29 October 2019

In silico design and automated learning to boost next-generation smart biomanufacturing

scientific article published on 17 October 2020

In silico mechanistic profiling to probe small molecule binding to sulfotransferases

scientific article (publication date: 2013)

InSilicoSpectro: an open-source proteomics library.

scientific article

Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6.

scientific article

Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli

scientific article published on 07 January 2019

Mapping the patent landscape of synthetic biology for fine chemical production pathways

scientific article

Methyl side-chain dynamics prediction based on protein structure.

scientific article

Molecular signatures-based prediction of enzyme promiscuity

scientific article

Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.

scientific article published on 19 December 2017

Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation

scientific article published on 01 July 2019

Origins of specificity and promiscuity in metabolic networks

scientific article published on 3 November 2011

Overcoming drug resistance through in silico prediction

scientific article published on March 2014

PartsGenie: an integrated tool for optimising and sharing synthetic biology parts

scholarly article published 15 September 2017

PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts

scholarly article by Neil Swainston published in February 2018

Pathways to cellular supremacy in biocomputing

scientific article published on 20 November 2019

RetroPath2.0: A retrosynthesis workflow for metabolic engineers

article published in 2017

RetroPath2.0: A retrosynthesis workflow for metabolic engineers.

scientific article published on 9 December 2017

RetroRules: a database of reaction rules for engineering biology

scientific article published on 01 January 2019

Retropath: automated pipeline for embedded metabolic circuits

scientific article published on 16 October 2013

Retrosynthetic Design of Heterologous Pathways

scientific article published on 01 January 2013

SYNBIOCHEM-a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals

scientific article

SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli

scientific article published on 18 March 2019

Selenzyme: Enzyme selection tool for pathway design

scientific article published on 7 February 2018

Selenzyme: Enzyme selection tool for pathway design

Semisupervised Gaussian Process for Automated Enzyme Search.

scientific article published on 23 March 2016

SensiPath: computer-aided design of sensing-enabling metabolic pathways

scientific article published on 22 April 2016

Stereo signature molecular descriptor

scientific article

SynBiopython: an open-source software library for Synthetic Biology

publication published on 01 January 2021

Synergistic Synthetic Biology: Units in Concert

scientific article published on 16 October 2013

Synthetic biology for pharmaceutical drug discovery

scientific article

The modular organization of domain structures: insights into protein-protein binding

scientific article

Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering.

scientific article published on 15 October 2014

XTMS: pathway design in an eXTended metabolic space

scientific article published on 3 May 2014

biochem4j: Integrated and extensible biochemical knowledge through graph databases.

scientific article published on 14 July 2017

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