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List of works by Chuming Chen

A fast Peptide Match service for UniProt Knowledgebase

scientific article published on 19 August 2013

AGML Central: web based gel proteomic infrastructure.

scientific article published on 12 January 2005

An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.

scientific article

Annotation of biologically relevant ligands in UniProtKB using ChEBI

scientific article published on 9 December 2022

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

scientific article

Computational clustering for viral reference proteomes.

scientific article published on 26 February 2016

Data integration gets 'Sloppy'

scientific article

Elevated FGF21 secretion, PGC-1α and ketogenic enzyme expression are hallmarks of iron-sulfur cluster depletion in human skeletal muscle

scientific article published on 13 August 2013

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.

scientific article

Marine genomics: a clearing-house for genomic and transcriptomic data of marine organisms

scientific article

Ongoing and future developments at the Universal Protein Resource

scientific article

PIRSitePredict for protein functional site prediction using position-specific rules

Perspectives on tracking data reuse across biodata resources

Protein Bioinformatics Databases and Resources.

scientific article

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data

scientific article

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

scientific article

Protein bioinformatics databases and resources

scientific article published on 01 January 2011

Protein ontology on the semantic web for knowledge discovery

scientific article published on 12 October 2020

RESTful API for iPTMnet: a resource for protein post-translational modification network discovery

scientific article published on 01 January 2020

RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism

scientific article

Reorganizing the protein space at the Universal Protein Resource (UniProt)

scientific article (publication date: 2012)

Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.

scientific article

SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes

scientific article

Software for pre-processing Illumina next-generation sequencing short read sequences.

scientific article

Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus)

scientific article published on 21 September 2018

Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence

scientific article published on 30 June 2020

UniProt: the Universal Protein Knowledgebase in 2023

scientific article published on 21 November 2022

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

scientific article published on 12 May 2020

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

scientific article published in December 2020

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

scientific article published on 29 May 2020

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