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List of works by Alexander Herbig

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Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

scientific article (publication date: 23 October 2014)
High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates

scientific article
Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

scientific article (publication date: 13 June 2013)
Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

scientific article
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

scientific article
EAGER: efficient ancient genome reconstruction

scientific article published on 31 March 2016
The 5300-year-old Helicobacter pylori genome of the Iceman

scientific article
Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis

scientific article
Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

scientific article
Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster

scientific article
Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics

scientific article
A novel point mutation promotes growth phase-dependent daptomycin tolerance in Staphylococcus aureus

scientific article published on 22 June 2015
The Stone Age Plague and Its Persistence in Eurasia

scientific article published on 20 November 2017
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico

scientific article published on 15 January 2018
GenomeRing: alignment visualization based on SuperGenome coordinates

scientific article published on June 2012
A Robust Framework for Microbial Archaeology

scientific article
Parallel detection of ancient pathogens via array-based DNA capture

scientific article
A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim

scientific article (publication date: November 2016)
Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum

scientific article published on 26 October 2012
Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication

scientific article
AureoWiki ̵ The repository of the Staphylococcus aureus research and annotation community

scientific article
nocoRNAc: characterization of non-coding RNAs in prokaryotes

scientific article
Neolithic and medieval virus genomes reveal complex evolution of hepatitis B.

scientific article published on 10 May 2018
Ancient pathogen genomics as an emerging tool for infectious disease research

scientific article published on 01 June 2019
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague

scientific article
Effect of X-ray irradiation on ancient DNA in sub-fossil bones - Guidelines for safe X-ray imaging

scientific article
Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe.

scientific article
The PII protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor

scientific article published on 28 October 2011
Altering gene expression by aminocoumarins: the role of DNA supercoiling in Staphylococcus aureus

scientific article
Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes

scientific article published on 18 December 2017
Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750)

scientific article published on 04 June 2019
Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes

scientific article published on 2 October 2019
Mitochondrial Genomes of Giant Deers Suggest their Late Survival in Central Europe

scientific article
MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman

scholarly article published 27 April 2016
Metabolic and transcriptional activities of Staphylococcus aureus challenged with high-doses of daptomycin

scientific article published on 28 May 2014
Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains.

scientific article
Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research

scientific article published on 17 July 2018
dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome

article
A technical platform for generating reproducible expression data from Streptomyces coelicolor batch cultivations.

scientific article
HOPS: automated detection and authentication of pathogen DNA in archaeological remains

scientific article published on 16 December 2019
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

scientific article published on 24 February 2020
The Stone Age Plague: 1000 years of Persistence in Eurasia

scholarly article
Salmonella entericagenomes recovered from victims of a major 16th century epidemic in Mexico

GaggleBridge: collaborative data analysis

scientific article
A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe

scientific article published on 11 June 2020
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens

scientific article published on 05 July 2019
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

scholarly article published 25 March 2019
Advances in the molecular detection of tuberculosis in pre-contact Andean South America

scientific article published on 19 January 2020
A58 Epidemic dynamics of ancient disease outbreaks

article published in 2019
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

scientific article published on 10 August 2020

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