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List of works by Alexander Herbig

2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals

scientific article published on 28 August 2020

A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road

scientific article published on 21 September 2021

A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim

scientific article (publication date: November 2016)

A Robust Framework for Microbial Archaeology

scientific article

A novel point mutation promotes growth phase-dependent daptomycin tolerance in Staphylococcus aureus

scientific article published on 22 June 2015

A phylogeography of the second plague pandemic revealed through the analysis of historical Y. pestis genomes

A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

scholarly article published 25 March 2019

A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex

scientific article published on 10 August 2020

A technical platform for generating reproducible expression data from Streptomyces coelicolor batch cultivations.

scientific article

A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe

scientific article published on 11 June 2020

A58 Epidemic dynamics of ancient disease outbreaks

article published in 2019

Advances in the molecular detection of tuberculosis in pre-contact Andean South America

scientific article published on 19 January 2020

Altering gene expression by aminocoumarins: the role of DNA supercoiling in Staphylococcus aureus

scientific article

Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague.

scientific article

Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia pestis on Human Immunity Genes

scientific article published on 01 September 2021

Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750)

scientific article published on 04 June 2019

Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750):

Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe.

scientific article

Ancient herpes simplex 1 genomes reveal recent viral structure in Eurasia

scientific article published in 2022

Ancient pathogen genomics as an emerging tool for infectious disease research

scientific article published on 01 June 2019

AncientYersinia pestisgenomes provide no evidence for the origins or spread of the Justinianic Plague

scientific article

AureoWiki ̵ The repository of the Staphylococcus aureus research and annotation community

scientific article

Automated transcription start site prediction for comparative Transcriptomics using the SuperGenome

Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes

scientific article published on 18 December 2017

Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum

scientific article published on 26 October 2012

Comparison of target enrichment strategies for ancient pathogen DNA

scientific article published on 02 November 2020

CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

scientific article published on 17 April 2020

EAGER: efficient ancient genome reconstruction

scientific article published on 31 March 2016

Effect of X-ray irradiation on ancient DNA in sub-fossil bones - Guidelines for safe X-ray imaging

scientific article

Effect of X-ray irradiation on ancient DNA in sub-fossil bones - Guidelines for safe x-ray imaging

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

scientific article

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

Emergence of human-adapted Salmonella enterica is linked to the Neolithization process

scientific article published on 24 February 2020

GaggleBridge: collaborative data analysis

scientific article

Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae

scientific article (publication date: 13 June 2013)

GenomeRing: alignment visualization based on SuperGenome coordinates

scientific article published on June 2012

Geographically dispersed zoonotic tuberculosis in pre-contact South American human populations

scientific article published on 07 March 2022

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

scientific article

HOPS: Automated detection and authentication of pathogen DNA in archaeological remains

scholarly article by Ron Huebler published in January 2019

HOPS: automated detection and authentication of pathogen DNA in archaeological remains

scientific article published on 16 December 2019

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates

scientific article

Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains.

scientific article

Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics

scientific article

Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis

scientific article

MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman

scholarly article published 27 April 2016

Metabolic and transcriptional activities of Staphylococcus aureus challenged with high-doses of daptomycin

scientific article published on 28 May 2014

Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication

scientific article

Mitochondrial Genomes of Giant Deers Suggest their Late Survival in Central Europe

scientific article

Mitochondrial Genomes of Giant Deers Suggest their Late Survival in Central Europe

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B.

scientific article published on 10 May 2018

Non-coding RNA, Classification

Non-coding RNA, Prediction

Origin and Health Status of First-Generation Africans from Early Colonial Mexico

scientific article published on 17 April 2020

Origin of modern syphilis and emergence of a contemporary pandemic cluster

article

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster

scientific article

Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens

scientific article published on 05 July 2019

Parallel detection of ancient pathogens via array-based DNA capture

scientific article

Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes

scientific article published on 2 October 2019

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

scientific article (publication date: 23 October 2014)

RNA Class

RNA Family

Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico

scientific article published on 15 January 2018

Salmonella entericagenomes recovered from victims of a major 16th century epidemic in Mexico

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research

scientific article published on 17 July 2018

Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague

scientific article published on 11 April 2022

The 5300-year-old Helicobacter pylori genome of the Iceman

scientific article

The PII protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor

scientific article published on 28 October 2011

The Stone Age Plague and Its Persistence in Eurasia

scientific article published on 20 November 2017

The Stone Age Plague: 1000 years of Persistence in Eurasia

scholarly article

The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

scientific article

dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome

article

nocoRNAc: characterization of non-coding RNAs in prokaryotes

scientific article

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