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List of works by Vítor Borges

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

scientific article published on 02 November 2023

Assessment of the load and transcriptional dynamics of Chlamydia trachomatis plasmid according to strains' tissue tropism.

scientific article published on 13 April 2013

Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors

scientific article published on 24 July 2015

Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature

scientific article published on 01 November 2019

Complete Genome Sequence of Chlamydia trachomatis Ocular Serovar C Strain TW-3.

scientific article published on 23 January 2014

CteG is a Chlamydia trachomatis effector protein that associates with the Golgi complex of infected host cells

scientific article published on 16 April 2019

Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation.

scientific article published on 03 March 2015

Differential Role of the T6SS in Acinetobacter baumannii Virulence

scientific article

Directional evolution of Chlamydia trachomatis towards niche-specific adaptation.

scientific article

Effect of long-term laboratory propagation on Chlamydia trachomatis genome dynamics

scientific article published on March 28, 2013

Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis

article

Genetic determinants of high-level oxacillin resistance in MRSA.

scientific article published on 19 March 2018

Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation

scientific article published on 17 October 2016

Genomic Study of a Clostridium difficile Multidrug Resistant Outbreak-Related Clone Reveals Novel Determinants of Resistance

scientific article published on 06 December 2018

Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars.

scientific article published on 26 July 2017

Helicobacter pullorum isolated from fresh chicken meat: antibiotic resistance and genomic traits of an emerging foodborne pathogen

scientific article

INSaFLU: an automated open web-based bioinformatics suite "from-reads" for influenza whole-genome-sequencing-based surveillance.

scientific article published on 29 June 2018

Identification of type III secretion substrates of Chlamydia trachomatis using Yersinia enterocolitica as a heterologous system

scientific article

Imipenem Resistance in Clostridium difficile Ribotype 017, Portugal

scientific article published in April 2018

Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis

scientific article

In silico scrutiny of genes revealing phylogenetic congruence with clinical prevalence or tropism properties of Chlamydia trachomatis strains

scientific article

Insights on Klebsiella pneumoniae Biofilms Assembled on Different Surfaces Using Phenotypic and Genotypic Approaches

scientific article

Legionella pneumophila strain associated with the first evidence of person-to-person transmission of Legionnaires' disease: a unique mosaic genetic backbone

scientific article published on 19 May 2016

Multiomics Assessment of Gene Expression in a Clinical Strain of CTX-M-15-Producing ST131 Escherichia coli

article

Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution

scientific article published on 29 March 2022

Nontuberculous Mycobacteria Persistence in a Cell Model Mimicking Alveolar Macrophages.

scientific article

Normalization strategies for real-time expression data in Chlamydia trachomatis

scientific article

Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

scientific article published in 2022

Phenotypic signatures and genetic determinants of oxacillin tolerance in a laboratory mutant of Staphylococcus aureus

scientific article published in PLoS ONE

Polymorphisms in Inc Proteins and Differential Expression ofincGenes among Chlamydia trachomatis Strains Correlate with Invasiveness and Tropism of Lymphogranuloma Venereum Isolates

scientific article published on October 5, 2012

Probable Person-to-Person Transmission of Legionnaires' Disease.

scientific article

Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets

scientific article published on 26 July 2019

Selection of reference genes for real-time expression studies in Streptococcus agalactiae

scientific article published on May 23, 2012

The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen

scientific article published on September 2017

The inhibition of the apoptosis pathway by the Coxiella burnetii effector protein CaeA requires the EK repetition motif, but is independent of survivin

scientific article published on 13 January 2016

Towards a rapid sequencing-based molecular surveillance and mosaicism investigation of Toxoplasma gondii

scientific article published on 02 January 2020

Virulence and antibiotic resistance plasticity of Arcobacter butzleri: Insights on the genomic diversity of an emerging human pathogen

scientific article published on 30 January 2020