List of works - Gert Hulselmans

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

article by Kristofer Davie et al published 9 August 2018 in Cell

A scalable SCENIC workflow for single-cell gene regulatory network analysis

scientific article published on 19 June 2020

Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia

scientific article

Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia

scientific article published on June 2017

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

scientific article

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia

scientific article

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein-Uhlenbeck Models

scientific article published on 4 May 2015

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

scientific article published on 30 August 2017

Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics

scientific article published on 01 May 2020

JAK3 mutants transform hematopoietic cells through JAK1 activation, causing T-cell acute lymphoblastic leukemia in a mouse model

scientific article (publication date: 5 September 2014)

Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference.

scientific article published on 18 December 2014

Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic

scientific article

Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma

scientific article published on 03 August 2020

SCENIC: single-cell regulatory network inference and clustering.

scientific article published on 9 October 2017

The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

scientific article published on 08 April 2019

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly.

scientific article published on 29 April 2015

iRegulon: from a gene list to a gene regulatory network using large motif and track collections

scientific article

List of works by Gert Hulselmans

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia

Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein-Uhlenbeck Models

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics

JAK3 mutants transform hematopoietic cells through JAK1 activation, causing T-cell acute lymphoblastic leukemia in a mouse model

Mapping gene regulatory networks in Drosophila eye development by large-scale transcriptome perturbations and motif inference.

Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic

Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma

SCENIC: single-cell regulatory network inference and clustering.

The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly.

iRegulon: from a gene list to a gene regulatory network using large motif and track collections