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List of works by Olga V Kalinina

A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance

scientific article published on 12 June 2020

Adaptation of a Bacterial Multidrug Resistance System Revealed by the Structure and Function of AlbA

scientific article published on 27 November 2018

Amino acid residues that determine functional specificity of NADP- and NAD-dependent isocitrate and isopropylmalate dehydrogenases.

scientific article

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies.

scientific article

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

scientific article published on 07 April 2021

Artificial intelligence for natural product drug discovery ⬇️

scientific article from 2023

Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

scientific article published in February 2004

BALL-SNP: combining genetic and structural information to identify candidate non-synonymous single nucleotide polymorphisms.

scientific article published on July 2015

BALL-SNPgp-from genetic variants toward computational diagnostics

scientific article

Combinations of protein-chemical complex structures reveal new targets for established drugs

scientific article

Combining specificity determining and conserved residues improves functional site prediction

scientific article

Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications

scientific article

Computational identification of novel amino-acid interactions in HIV Gag via correlated evolution.

scientific article

Consistent Prediction of Mutation Effect on Drug Binding in HIV-1 Protease Using Alchemical Calculations

article

Detection of atypical genes in virus families using a one-class SVM

scientific article

Enthalpy-Entropy Compensation upon Molecular Conformational Changes

scientific article published on 11 March 2015

Epistatic Interactions in NS5A of Hepatitis C Virus Suggest Drug Resistance Mechanisms

article

Harry Potter and the structural biologist's (Key)stone.

scientific article published on January 2006

How Molecular Conformational Changes Affect Changes in Free Energy

scientific article published in July 2015

Impact of genome reduction on bacterial metabolism and its regulation.

scientific article published in November 2009

Large oligomeric complex structures can be computationally assembled by efficiently combining docked interfaces

scientific article published on 6 August 2015

Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism.

scientific article published on 11 November 2013

Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

scientific article published on 19 May 2020

Phylogenetic inference of changes in amino acid propensities with single-position resolution

scientific article published on 18 February 2022

ProtChemSI: a network of protein-chemical structural interactions

scientific article

Relative Principal Components Analysis: Application to Analyzing Biomolecular Conformational Changes

scientific article published on 6 March 2019

SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.

scientific article published on July 2004

Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses.

scientific article published on 19 October 2015

Spatial distribution of disease-associated variants in three-dimensional structures of protein complexes

scientific article published on 25 September 2017

StructMAn: annotation of single-nucleotide polymorphisms in the structural context

scientific article

Targeting actin inhibits repair of doxorubicin-induced DNA damage: a novel therapeutic approach for combination therapy

scientific article published on 03 April 2019

The Role of Conformational Changes in Molecular Recognition

scientific article

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