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List of works by Yingying Wei

AGA: Interactive pipeline for reproducible gene expression and DNA methylation data analyses.

scientific article

Batch effects correction for microbiome data with Dirichlet-multinomial regression

scientific article published on 01 March 2019

Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

scientific article published on 15 July 2019

Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction

scientific article published on 01 July 2020

Gata6 potently initiates reprograming of pluripotent and differentiated cells to extraembryonic endoderm stem cells.

scientific article published in June 2015

Global Mapping of Transcription Factor Binding Sites by Sequencing Chromatin Surrogates: a Perspective on Experimental Design, Data Analysis, and Open Problems

scientific article

Integrative analyses of cancer data: a review from a statistical perspective

scientific article

Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC

scientific article published on 27 January 2017

Joint analysis of differential gene expression in multiple studies using correlation motifs

scientific article

Kruppel-like factor-9 (KLF9) inhibits glioblastoma stemness through global transcription repression and integrin α6 inhibition

scientific article

Measuring the spatial correlations of protein binding sites

scientific article

Outlier Analysis Defines Zinc Finger Gene Family DNA Methylation in Tumors and Saliva of Head and Neck Cancer Patients

scientific article

Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery.

scientific article

TRIB2 acts downstream of Wnt/TCF in liver cancer cells to regulate YAP and C/EBPα function

scientific article

iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets

scientific article

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