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List of works by Joseph T Wade

A 3' external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise

scientific article published on 16 April 2015

An HMG protein, Hmo1, associates with promoters of many ribosomal protein genes and throughout the rRNA gene locus in Saccharomyces cerevisiae.

scientific article

An allosteric mechanism of Rho-dependent transcription termination

scientific article

Association of RNA polymerase with transcribed regions in Escherichia coli

scientific article

ChIP-seq for genome-scale analysis of bacterial DNA-binding proteins.

scientific article published on January 2015

Chemical Inhibition of Kynureninase Reduces Pseudomonas aeruginosa Quorum Sensing and Virulence Factor Expression.

scientific article published on 19 January 2016

Comprehensive mapping of the Escherichia coli flagellar regulatory network

scientific article

Concerns about "Stress-Induced MazF-Mediated Proteins in Escherichia coli".

scientific article published on 4 June 2019

Coordinated regulation of acid resistance in Escherichia coli.

scientific article

Correction: Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network.

scientific article published on 17 September 2015

Correction: Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

scientific article published in 2021

Determining the Specificity of Cascade Binding, Interference, and Primed Adaptation In Vivo in the Escherichia coli Type I-E CRISPR-Cas System.

scientific article published on 17 April 2018

Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast

scientific article published on 4 October 2011

Extensive functional overlap between sigma factors in Escherichia coli.

scientific article

FRUIT, a scar-free system for targeted chromosomal mutagenesis, epitope tagging, and promoter replacement in Escherichia coli and Salmonella enterica.

scientific article

Fluorescence Imaging-Based Discovery of Membrane Domain-Associated Proteins in <i>Mycobacterium smegmatis</i>

scientific article published on 13 September 2021

Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding

scientific article

Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12

scientific article published on 23 January 2017

Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon

scientific article

Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites

scientific article

Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.

scientific article

H-NS and RNA polymerase: a love-hate relationship?

scientific article

Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase

scientific article published on 9 January 2017

Identification and characterization of small RNAs in Yersinia pestis

scientific article published on 16 January 2013

Identification of HilD-regulated genes in Salmonella enterica serovar Typhimurium.

scientific article published on 27 December 2013

Identification of bacterial sRNA regulatory targets using ribosome profiling.

scientific article

Identification of novel sRNAs in mycobacterial species

scientific article

Identification of regulatory RNA in bacterial genomes by genome-scale mapping of transcription start sites

scientific article

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape.

scientific article published on 4 November 2015

Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.

scientific article

Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion ⬇️

scientific article published on 06 September 2016

MrpJ Directly Regulates Proteus mirabilis Virulence Factors, Including Fimbriae and Type VI Secretion, during Urinary Tract Infection

scientific article published on 21 September 2018

Non-canonical protein-DNA interactions identified by ChIP are not artifacts.

scientific article published on 15 April 2013

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

scientific article published on 28 July 2014

Pervasive translation in <i>Mycobacterium tuberculosis</i>

scientific article published on 28 March 2022

Polycysteine-encoding leaderless short ORFs function as cysteine-responsive attenuators of operonic gene expression in mycobacteria

scientific article published on 17 March 2020

Redefining fundamental concepts of transcription initiation in bacteria

scientific article published on 14 July 2020

Regulatory Crosstalk between Motility and Interbacterial Communication in <i>Salmonella</i> Typhimurium

scientific article published on 30 November 2020

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

scientific article published in 2021

Reply to "Concerns about Recently Identified Widespread Antisense Transcription in Escherichia coli".

scientific article published on 18 May 2010

Repression of the Escherichia coli melR promoter by MelR: evidence that efficient repression requires the formation of a repression loop.

scientific article published on April 2000

Role of Ess1 in growth, morphogenetic switching, and RNA polymerase II transcription in Candida albicans

scientific article

Spurious transcription and its impact on cell function.

scientific article published on 5 October 2017

Technical considerations in using DNA microarrays to define regulons.

scientific article published on 26 October 2008

The BvgAS Regulon of Bordetella pertussis.

scientific article published on 10 October 2017

The evolutionary impact of intragenic FliA promoters in proteobacteria.

scientific article published on 24 February 2018

The molecular basis for control of ETEC enterotoxin expression in response to environment and host

scientific article

The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes.

scientific article

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

scientific article

The transition from transcriptional initiation to elongation

scientific article (publication date: April 2008)

Transcription termination and antitermination of bacterial CRISPR arrays

scientific article published on 30 October 2020

Translational control and Rho-dependent transcription termination are intimately linked in riboswitch regulation.

scientific article

Waking the neighbours: disruption of H-NS repression by overlapping transcription.

scientific article published on 23 February 2018

Where to begin? Mapping transcription start sites genome-wide in Escherichia coli

scientific article published on 20 October 2014

Widespread antisense transcription in Escherichia coli.

scientific article published on April 2010

Widespread divergent transcription from bacterial and archaeal promoters is a consequence of DNA-sequence symmetry

scientific article published on 06 May 2021

Widespread suppression of intragenic transcription initiation by H-NS.

scientific article published on 21 January 2014

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