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List of works by David Knapp

"Deep" sequencing accuracy and reproducibility using Roche/454 technology for inferring co-receptor usage in HIV-1.

scientific article

A blood transcriptome-based analysis of disease progression, immune regulation, and symptoms in coronavirus-infected patients

scientific article published on 08 December 2020

A dominant-negative isoform of IKAROS expands primitive normal human hematopoietic cells.

scientific article published on 11 October 2014

A multiplexable TALE-based binary expression system for in vivo cellular interaction studies.

scientific article published on 21 November 2017

A topological view of human CD34 cell state trajectories from integrated single-cell output and proteomic data

scientific article published on 08 January 2019

Addendum: Precise tuning of gene expression levels in mammalian cells.

scientific article

Aldehyde dehydrogenase activity is a biomarker of primitive normal human mammary luminal cells.

scientific article published in February 2012

Altered microRNA expression links IL6 and TNF-induced inflammaging with myeloid malignancy

scientific article published on 08 May 2020

An Approach for High-Resolution Mapping of Hawaiian Metrosideros Forest Mortality Using Laser-Guided Imaging Spectroscopy

article published in 2018

Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks

scientific article published in November 2016

Analysis of parameters that affect human hematopoietic cell outputs in mutant c-kit-immunodeficient mice

scientific article published on 10 January 2017

Analysis of the clonal growth and differentiation dynamics of primitive barcoded human cord blood cells in NSG mice

scientific article

Control of the hematopoietic stem cell state

scientific article published on 08 October 2013

Cord blood expansion. Pyrimidoindole derivatives are agonists of human hematopoietic stem cell self-renewal

scientific article

Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1.

scientific article

DNA barcoding reveals diverse growth kinetics of human breast tumour subclones in serially passaged xenografts

scientific article

Dates of HIV infection can be estimated for seroprevalent patients by coalescent analysis of serial next-generation sequencing data

scientific article

Decoupling tRNA promoter and processing activities enables specific Pol-II Cas9 guide RNA expression

scientific article published on 02 April 2019

Deep V3 Sequencing for HIV Type 1 Tropism in Treatment-Naive Patients: A Reanalysis of the MERIT Trial of Maraviroc

article

Developmental changes in the in vitro activated regenerative activity of primitive mammary epithelial cells.

scientific article

Discovery of a CD10-negative B-progenitor in human fetal life identifies unique ontogeny-related developmental programs

scientific article published on 05 August 2019

Disruption of IKAROS activity in primitive chronic-phase CML cells mimics myeloid disease progression

scientific article published on 4 November 2014

Dissociation of Survival, Proliferation, and State Control in Human Hematopoietic Stem Cells

scientific article published on January 2017

Distinct signaling programs control human hematopoietic stem cell survival and proliferation.

scientific article

Distinct stromal cell factor combinations can separately control hematopoietic stem cell survival, proliferation, and self-renewal.

scientific article

Dominant-negative IKAROS enhances IL-3-stimulated signaling in wild-type but not BCR-ABL1(+) mouse BA/F3 cells

scientific article published on 4 May 2015

Early production of human neutrophils and platelets posttransplant is severely compromised by growth factor exposure.

scientific article

Enhanced normal short-term human myelopoiesis in mice engineered to express human-specific myeloid growth factors

scientific article

Extracting Structural Vegetation Components From Small-Footprint Waveform Lidar for Biomass Estimation in Savanna Ecosystems

Factors influencing the sensitivity and specificity of conventional sequencing in human immunodeficiency virus type 1 tropism testing.

scientific article published on 21 November 2012

GateFinder: projection-based gating strategy optimization for flow and mass cytometry

scientific article published on 01 December 2018

H3K79me2/3 controls enhancer-promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells

scientific article published on 02 April 2020

Hematopoietic Stem Cells Are the Major Source of Multilineage Hematopoiesis in Adult Animals

scientific article published on 28 August 2016

Heterogeneity in hematopoietic stem cell populations: implications for transplantation

scientific article published on July 2013

High-Resolution Single-Cell DNA Methylation Measurements Reveal Epigenetically Distinct Hematopoietic Stem Cell Subpopulations

High-throughput analysis of single hematopoietic stem cell proliferation in microfluidic cell culture arrays.

scientific article published on 22 May 2011

In vitro selection of clinically relevant bevirimat resistance mutations revealed by "deep" sequencing of serially passaged, quasispecies-containing recombinant HIV-1

scientific article

Increasingly successful highly active antiretroviral therapy delays the emergence of new HLA class I-associated escape mutations in HIV-1.

scientific article published on 28 March 2012

Landscape-Scale Controls on Aboveground Forest Carbon Stocks on the Osa Peninsula, Costa Rica

scientific article

Limited evolution of inferred HIV-1 tropism while viremia is undetectable during standard HAART therapy

scientific article

Mass Cytometric Analysis Reveals Viable Activated Caspase-3+ Luminal Progenitors in the Normal Adult Human Mammary Gland

scientific article

Nucleosome Density ChIP-Seq Identifies Distinct Chromatin Modification Signatures Associated with MNase Accessibility

scientific article published in November 2016

Precise tuning of gene expression levels in mammalian cells

article

Prevalence and virologic consequences of transmitted HIV-1 drug resistance in Uganda

scientific article

Quantitation of Human Cells that Produce Neutrophils and Platelets in Vivo Obtained from Normal Donors Treated with Granulocyte Colony-Stimulating Factor and/or Plerixafor.

scientific article published on 2 August 2016

Replication timing alterations in leukemia affect clinically relevant chromosome domains

scientific article published on 01 November 2019

Scaling up equivalent water thickness in savanna environments: From local to biome scale, via ground, Hyperion, and MODIS data

Single-cell analysis identifies a CD33+ subset of human cord blood cells with high regenerative potential

scientific article published on 25 May 2018

Survey Says: "COVID-19 Lockdown Hits Young Faculty and Clinical Trials"

scientific article published on 17 June 2020

Temporal variability of forest fires in eastern Amazonia

scientific article published on October 2011

The Lin28b-let-7-Hmga2 axis determines the higher self-renewal potential of fetal haematopoietic stem cells

scientific article published on 30 June 2013

The miR-185/PAK6 Axis Predicts Therapy Response and Regulates Survival of Drug-Resistant Leukemic Stem Cells in CML

scientific article published on 08 April 2020

UM171 Enhances Lentiviral Gene Transfer and Recovery of Primitive Human Hematopoietic Cells

article

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