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List of works by Hiroshi Tsugawa

A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms

scientific article published on 28 March 2019

A lipidome atlas in MS-DIAL 4

scientific article published on 15 June 2020

Advances in computational metabolomics and databases deepen the understanding of metabolisms

scientific article published on 29 January 2018

Automation of chemical assignment for identifying molecular formula of S-containing metabolites by combining metabolomics and chemoinformatics with 34S labeling

article

Bioinformatics in bioscience and bioengineering: Recent advances, applications, and perspectives

scientific article published in 2022

Boosting Sensitivity in Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Tandem Mass Spectrometry for Product Ion Analysis of Monoterpene Indole Alkaloids

scientific article published on 17 December 2015

Characterization of Lipid Profiles after Dietary Intake of Polyunsaturated Fatty Acids Using Integrated Untargeted and Targeted Lipidomics

scientific article published on 21 October 2019

Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis

scientific article published on 15 January 2021

Comprehensive comparison of in silico MS/MS fragmentation tools of the CASMI contest: database boosting is needed to achieve 93% accuracy

scientific article published on 25 May 2017

Comprehensive identification of sphingolipid species by in silico retention time and tandem mass spectral library

scientific article (publication date: 15 March 2017)

Correlation-based Deconvolution (CorrDec) to generate high-quality MS2 spectra from data-independent acquisition in multi-sample studies

scientific article published on 10 July 2020

Creating a Reliable Mass Spectral-Retention Time Library for All Ion Fragmentation-Based Metabolomics

scientific article published on 26 October 2019

Critical Assessment of Small Molecule Identification 2016: automated methods

scientific article

Current metabolomics: Technological advances ⬇️

scientific article published on 07 March 2013

Defining the Scope of Exposome Studies and Research Needs from a Multidisciplinary Perspective

Different-batch metabolome analysis of Saccharomyces cerevisiae based on gas chromatography/mass spectrometry

scientific article published on 19 August 2013

Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies.

scientific article

Elucidation of Gut Microbiota-Associated Lipids Using LC-MS/MS and 16S rRNA Sequence Analyses

scientific article published on 23 November 2020

Feature-based molecular networking in the GNPS analysis environment

scientific article published on 24 August 2020

GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA) ⬇️

scientific article published on May 4, 2011

Global profiling of gut microbiota-associated lipid metabolites in antibiotic-treated mice by LC-MS/MS-based analyses

scientific article published on 21 April 2021

Guiding the choice of informatics software and tools for lipidomics research applications

scientific article published on 21 December 2022

Highly sensitive and selective analysis of widely targeted metabolomics using gas chromatography/triple-quadrupole mass spectrometry ⬇️

scientific article published on July 16, 2013

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software

scientific article

Identification of Biomarkers of Stent Restenosis With Serum Metabolomic Profiling Using Gas Chromatography/Mass Spectrometry ⬇️

scientific article published on May 16, 2012

Identification of Plasma Inositol and Indoxyl Sulfate as Novel Biomarker Candidates for Atherosclerosis in Patients with Type 2 Diabetes. -Findings from Metabolome Analysis Using GC/MS

scientific article published on 25 January 2020

Identification of small molecules using accurate mass MS/MS search

scientific article (publication date: 24 April 2017)

Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics.

scientific article

Integrated Strategy for Unknown EI-MS Identification Using Quality Control Calibration Curve, Multivariate Analysis, EI-MS Spectral Database, and Retention Index Prediction

scientific article

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

scientific article

Lipid Annotator: Towards Accurate Annotation in Non-Targeted Liquid Chromatography High-Resolution Tandem Mass Spectrometry (LC-HRMS/MS) Lipidomics Using A Rapid and User-Friendly Software

scientific article published on 12 March 2020

MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies

scientific article

MRMPROBS suite for metabolomics using large-scale MRM assays

scientific article

MRMPROBS: A Data Assessment and Metabolite Identification Tool for Large-Scale Multiple Reaction Monitoring Based Widely Targeted Metabolomics ⬇️

scientific article published on May 21, 2013

MS-CleanR: A feature-filtering workflow for untargeted LC-MS based metabolomics

scientific article published on 26 June 2020

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

scientific article (publication date: June 2015)

Mass Spectrometry Data Repository Enhances Novel Metabolite Discoveries with Advances in Computational Metabolomics

scientific article published on 24 June 2019

Metabolome-Based Discrimination Analysis of Shallot Landraces and Bulb Onion Cultivars Associated with Differences in the Amino Acid and Flavonoid Profiles

scientific article published on 13 November 2020

Metabolomics and complementary techniques to investigate the plant phytochemical cosmos

scientific article published in 2021

Metabolomics with 15N Labeling for Characterizing Missing Monoterpene Indole Alkaloids in Plants ⬇️

scientific article published on 21 February 2020

Method for Assessing the Statistical Significance of Mass Spectral Similarities Using Basic Local Alignment Search Tool Statistics ⬇️

scientific article published on August 14, 2013

Novel strategy for non-targeted isotope-assisted metabolomics by means of metabolic turnover and multivariate analysis

scientific article published on 25 August 2014

Plasma metabolites associated with arterial stiffness in patients with type 2 diabetes

scientific article published on 11 June 2020

Practical non-targeted gas chromatography/mass spectrometry-based metabolomics platform for metabolic phenotype analysis ⬇️

scientific article published on June 8, 2011

Predicting Molecular Formula from Mass Spectrometry Data

scientific article published in 2022

Publisher Correction: A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms

scientific article published on 01 May 2019

Retip: retention time prediction for compound annotation in untargeted metabolomics

scientific article published on 10 May 2020

The importance of bioinformatics for connecting data-driven lipidomics and biological insights.

scientific article

Using MS-FINDER for identifying 19 natural products in the CASMI 2016 contest

scientific article published on 09 December 2016

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