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List of works by Irene Papatheodorou

A compendium of uniformly processed human gene expression and splicing quantitative trait loci

scientific article published on 07 September 2021

A metadata approach for clinical data management in translational genomics studies in breast cancer.

scientific article

A proteomics sample metadata representation for multiomics integration and big data analysis

scientific article published in 2021

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

scientific article published on 01 October 2020

A user guide for the online exploration and visualization of PCAWG data

scientific article published on 07 July 2020

An integrated landscape of protein expression in human cancer

scientific article published on 23 April 2021

ArrayExpress update - from bulk to single-cell expression data

scientific article published on 01 January 2019

Brain Regeneration Resembles Brain Cancer at Its Early Wound Healing Stage and Diverges From Cancer Later at Its Proliferation and Differentiation Stages

scientific article published on 10 February 2022

Common and distinct transcriptional signatures of mammalian embryonic lethality

scientific article published on 26 June 2019

Community-driven ELIXIR activities in single-cell omics

scientific article published on 29 July 2022

Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage

scientific article published on 09 October 2020

Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing

scientific article

Computational biology for ageing

scientific article

DAF-16/FoxO directly regulates an atypical AMP-activated protein kinase gamma isoform to mediate the effects of insulin/IGF-1 signaling on aging in Caenorhabditis elegans

scientific article

DRscDB: A single-cell RNA-seq resource for data mining and data comparison across species

scientific article published on 11 April 2021

Ensembl Genomes 2020-enabling non-vertebrate genomic research

scientific article published on 01 January 2020

Expression Atlas update: from tissues to single cells

scientific article published on 01 January 2020

Expression Atlas update: gene and protein expression in multiple species

scientific article published on 19 November 2021

Expression Atlas: gene and protein expression across multiple studies and organisms.

scientific article

From ArrayExpress to BioStudies

scientific article published on 19 November 2020

Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud

Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling

scientific article

Gramene 2018: unifying comparative genomics and pathway resources for plant research

scientific article

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

scientific article published on 10 November 2020

Guidelines for reporting single-cell RNA-seq experiments

scientific article published on 13 November 2020

Inference of Gene Relations from Microarray Data by Abduction

article

Interplay of dFOXO and two ETS-family transcription factors determines lifespan in Drosophila melanogaster

scientific article

Linking gene expression to phenotypes via pathway information

scientific article published on 11 April 2015

MDL-1, a growth- and tumor-suppressor, slows aging and prevents germline hyperplasia and hypertrophy in C. elegans.

scientific article published on February 2014

Online resources for PCAWG data exploration, visualization, and discovery

scholarly article published 14 July 2017

Open Targets: a platform for therapeutic target identification and validation

scientific article

Plant Reactome: a knowledgebase and resource for comparative pathway analysis

scientific article published on 01 January 2020

Putative cell type discovery from single-cell gene expression data

scientific article published on 18 May 2020

Toward a data infrastructure for the Plant Cell Atlas

scientific article published on 6 October 2022

Transcriptional feedback in the insulin signalling pathway modulates ageing in both Caenorhabditis elegans and Drosophila melanogaster

scientific article published on 26 April 2013

Using answer set programming to integrate RNA expression with signalling pathway information to infer how mutations affect ageing

scientific article

Using association rule mining to determine promising secondary phenotyping hypotheses

scientific article

Visualization of microarray results to assist interpretation

scientific article published on 01 January 2004

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