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List of works by Douwe van Sinderen

A GntR-type transcriptional repressor controls sialic acid utilization in Bifidobacterium breve UCC2003

scientific article published on 11 December 2014

A decade of Streptococcus thermophilus phage evolution in an Irish dairy plant

scientific article published on 9 March 2018

A dichotomous epigenetic mechanism governs expression of the LlaJI restriction/modification system

scientific article published in September 2005

A general method for selection of riboflavin-overproducing food grade micro-organisms

scientific article

A genetic dissection of the LlaJI restriction cassette reveals insights on a novel bacteriophage resistance system

scientific article

A genome-based identification approach for members of the genus Bifidobacterium

scientific article published on 27 January 2015

A topological model of the baseplate of lactococcal phage Tuc2009.

scientific article published on 28 November 2007

A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.

scientific article

Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis

scientific article

Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota

scientific article published on 08 April 2019

An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria

scientific article published on 19 June 2012

An interactive regulatory network controls stress response in Bifidobacterium breve UCC2003.

scientific article published on 04 September 2009

Analyses of bifidobacterial prophage-like sequences

scientific article published on 15 March 2010

Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010

scientific article

Anatomy of a lactococcal phage tail

scientific article

Another Brick in the Wall: a Rhamnan Polysaccharide Trapped inside Peptidoglycan of Lactococcus lactis

scientific article published on 12 September 2017

Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol

scientific article

Assessing the functionality and genetic diversity of lactococcal prophages.

scientific article

Autoinducer-2 plays a crucial role in gut colonization and probiotic functionality of Bifidobacterium breve UCC2003.

scientific article

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

scientific article published on 30 August 2012

Bacterial vitamin B2, B11 and B12 overproduction: An overview

scientific article published on 21 April 2009

Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity

scientific article

Bacteriophages in dairy products: pros and cons

scientific article published on April 2007

Bifidobacteria and Their Role as Members of the Human Gut Microbiota

scientific article

Bifidobacteria and humans: our special friends, from ecological to genomics perspectives

scientific article published on 16 September 2013

Bifidobacteria and the infant gut: an example of co-evolution and natural selection

scientific article

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

scientific article

Bifidobacteria of the Human Gut

Bifidobacteria: from ecology to genomics

scientific article published on January 2009

Bifidobacterial Transfer from Mother to Child as Examined by an Animal Model

scientific article published on 27 August 2019

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection.

scientific article published on 23 January 2012

Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut

scientific article

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

scientific article published on 29 March 2020

Bifidobacterium breve UCC2003 metabolises the human milk oligosaccharides lacto-N-tetraose and lacto-N-neo-tetraose through overlapping, yet distinct pathways

scientific article published on 08 December 2016

Bifidobacterium breve UCC2003 surface exopolysaccharide production is a beneficial trait mediating commensal-host interaction through immune modulation and pathogen protection

scientific article published on 20 June 2012

Bifidobacterium breve reduces apoptotic epithelial cell shedding in an exopolysaccharide and MyD88-dependent manner ⬇️

scientific article published on January 2017

Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny

scientific article

Bile-inducible efflux transporter from Bifidobacterium longum NCC2705, conferring bile resistance

scientific article published on 20 March 2009

Biochemical analysis of cross-feeding behaviour between two common gut commensals when cultivated on plant-derived arabinogalactan

scientific article published on 09 May 2020

Biodiversity of Phages in Global Dairy Fermentations

scholarly article by Katherine Lavelle published in October 2018

Biodiversity of bacteriophages infecting Lactococcus lactis starter cultures

scientific article

Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese-producing plants

scientific article

Bioprotective potential of lactic acid bacteria in malting and brewing

scientific article published on August 2008

BlastXtract--a new way of exploring translated searches

scientific article published on 26 July 2005

Broad-spectrum antifungal-producing lactic acid bacteria and their application in fruit models ⬇️

scientific article published on November 17, 2012

Carbohydrate catabolic diversity of bifidobacteria and lactobacilli of human origin.

scientific article

Carbohydrate metabolism in Bifidobacteria ⬇️

scientific article published on February 16, 2011

Characterisation of a Hydroxycinnamic Acid Esterase From the subsp. Taxon

scientific article published in 2018

Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003.

scientific article published on 08 August 2008

Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118.

scientific article

Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses

scientific article published on October 2004

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B

scientific article

Characterization of virus-like particles associated with the human faecal and caecal microbiota

scientific article

Combination of multiplex PCR and PCR-denaturing gradient gel electrophoresis for monitoring common sourdough-associated Lactobacillus species

scientific article published on May 2006

Comparative Genome Analyses of Lactobacillus crispatus Isolates from Different Ecological Niches Reveal an Adaptation of This Species to the Human Vaginal Environment

scientific article published in 2021

Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization.

scientific article published on 24 April 2018

Comparative analyses of prophage-like elements present in bifidobacterial genomes

scientific article published on 04 September 2009

Comparative analyses of prophage-like elements present in two Lactococcus lactis strains

scientific article

Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation

scientific article

Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve

scientific article published on 27 December 2017

Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family

scientific article

Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei

scientific article

Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon

scientific article published on 03 May 2013

Comparative genomics of the Bifidobacterium breve taxon

scientific article

Comparative genomics of the genus Bifidobacterium

scientific article published on 15 July 2010

Complete Genome Sequence of Lactobacillus plantarum Strain 16, a Broad-Spectrum Antifungal-Producing Lactic Acid Bacterium

scientific article published on August 2013

Complete Genome Sequence of Lactococcus lactis subsp. cremoris 3107, Host for the Model Lactococcal P335 Bacteriophage TP901-1

scholarly article published January 2019

Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage

scientific article published on 31 January 2013

Complete genome sequence of Bifidobacterium animalis subsp. lactis BLC1

scientific article published on November 2011

Complete genome sequence of the 936-type lactococcal bacteriophage CaseusJM1.

scientific article

Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363.

scientific article published on 16 February 2007

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

scientific article

Construction of two Lactococcus lactis expression vectors combining the Gateway and the NIsin Controlled Expression systems

scientific article published on 23 July 2011

Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium

scientific article

Current taxonomy of phages infecting lactic acid bacteria

scientific article published on 24 January 2014

Detecting Lactococcus lactis Prophages by Mitomycin C-Mediated Induction Coupled to Flow Cytometry Analysis

scientific article published on 19 July 2017

Determination of the cell wall polysaccharide and teichoic acid structures from Lactococcus lactis IL1403.

scientific article published on 12 April 2018

Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice

scientific article

Differences in lactococcal cell wall polysaccharide structure are major determining factors in bacteriophage sensitivity

scientific article

Discovering lactic acid bacteria by genomics

scientific article

Discovering novel bile protection systems in Bifidobacterium breve UCC2003 through functional genomics

scientific article published on 9 December 2011

Discovery of a conjugative megaplasmid in Bifidobacterium breve.

scientific article

Distribution of megaplasmids in Lactobacillus salivarius and other lactobacilli

scientific article

Diversity of bifidobacteria within the infant gut microbiota

scientific article

Diversity, ecology and intestinal function of bifidobacteria

scientific article

Elucidating the gut microbiome of ulcerative colitis: bifidobacteria as novel microbial biomarkers

scientific article published on 7 September 2016

Envisioning emerging frontiers on human gut microbiota and its applications

scientific article published on 24 September 2020

Erratum to: Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

scientific article published on 17 February 2017

Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010.

scientific article published on 22 March 2013

Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol

scientific article

Evidence for cholesterol-lowering activity by Bifidobacterium bifidum PRL2010 through gut microbiota modulation

scientific article published on 12 April 2015

Expanding the molecular toolbox for Lactococcus lactis: construction of an inducible thioredoxin gene fusion expression system ⬇️

scientific article published on August 9, 2011

Exploiting Bifidobacterium genomes: the molecular basis of stress response

scientific article published on 14 June 2007

Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach

scientific article published on 12 October 2012

Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010.

scientific article

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

scientific article published on 31 July 2015

Exploring the Ecological Effects of Naturally Antibiotic-Insensitive Bifidobacteria in the Recovery of the Resilience of the Gut Microbiota during and after Antibiotic Treatment

scientific article published in 2022

Exploring the diversity of the bifidobacterial population in the human intestinal tract

scientific article

Expression of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in response to environmental gut conditions

scientific article published on 7 July 2014

Feeding the microbiota: transducer of nutrient signals for the host

scientific article

Fibrinogen-binding and platelet-aggregation activities of aLactobacillus salivariussepticaemia isolate are mediated by a novel fibrinogen-binding protein

article

From bacterial genome to functionality; case bifidobacteria

scientific article published on 13 June 2007

Functional analysis of the pBC1 replicon from Bifidobacterium catenulatum L48.

scientific article published on 18 August 2007

Functional and structural dissection of the tape measure protein of lactococcal phage TP901-1.

scientific article

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

scientific article

Fungal β-glucan-facilitated cross-feeding activities between Bacteroides and Bifidobacterium species

scientific article published in 2023

Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing

scientific article

Generation of Bacteriophage-Insensitive Mutants of Streptococcus thermophilus via an Antisense RNA CRISPR-Cas Silencing Approach

scientific article published on 27 November 2017

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

scientific article published on 30 August 2011

Genetic and functional characterisation of the lactococcal P335 phage-host interactions

scientific article

Genetic and transcriptional organization of the clpC locus in Bifidobacterium breve UCC 2003.

scientific article

Genetic characterization of the Bifidobacterium breve UCC 2003 hrcA locus

scientific article

Genetic strategies for mucin metabolism in Bifidobacterium bifidum PRL2010: an example of possible human-microbe co-evolution

scientific article published in May 2011

Genome Sequence of Serratia marcescens Phage BF.

scientific article published on 8 June 2017

Genome Sequences of Eight Prophages Isolated from Lactococcus lactis Dairy Strains.

scientific article published on 10 November 2016

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

scientific article

Genome analysis of the Clostridium difficile phage PhiCD6356, a temperate phage of the Siphoviridae family

scientific article published on 8 May 2010

Genome sequence of Bifidobacterium breve DPC 6330, a strain isolated from the human intestine

scientific article published on December 2011

Genome sequence of Parascardovia denticolens IPLA 20019, isolated from human breast milk

scientific article

Genome-Wide Search for Genes Required for Bifidobacterial Growth under Iron-Limitation

scientific article

Genome-scale analyses of health-promoting bacteria: probiogenomics

scientific article

Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.

scientific article

Genomic diversity and distribution of Bifidobacterium longum subsp. longum across the human lifespan

scientific article

Genomic encyclopedia of type strains of the genus Bifidobacterium

scientific article

Genomics and ecological overview of the genus Bifidobacterium

scientific article published on 28 December 2010

Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria

scholarly article by Marco Ventura et al published 26 June 2007 in Antonie van Leeuwenhoek

Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

scientific article

Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment

scientific article published on 20 November 2015

Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus

scientific article published on 12 September 2017

Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR

scientific article published on 14 October 2011

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

scientific article published on 28 December 2017

Glycan Utilization and Cross-Feeding Activities by Bifidobacteria

scientific article

Glycan cross-feeding activities between bifidobacteria under in vitro conditions

scientific article

Gram-positive phage-host interactions

scientific article published on 11 February 2015

Health benefits conferred by the human gut microbiota during infancy

article

High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting

scientific article (publication date: 2012)

Host recognition by lactic acid bacterial phages

scientific article published on August 2017

Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria

scientific article published on 16 August 2012

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers

scientific article published on 12 September 2017

Human gut microbiota and bifidobacteria: from composition to functionality

scientific article

Identification and Analysis of a Novel Group of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus

scientific article published on 17 June 2016

Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003

scientific article published on 10 November 2006

Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve

scientific article published on 29 August 2013

Identification and characterization of lactococcal-prophage-carried superinfection exclusion genes

scientific article published on 22 August 2008

Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages

scientific article published in January 2002

Identification of DNA Base Modifications by Means of Pacific Biosciences RS Sequencing Technology

scientific article published in January 2018

Identification of a new P335 subgroup through molecular analysis of lactococcal phages Q33 and BM13.

scientific article published on 10 May 2013

Identification of iron-regulated genes of Bifidobacterium breve UCC2003 as a basis for controlled gene expression ⬇️

scientific article published on May 1, 2012

Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis

scientific article

Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009.

scientific article

Identification of two-component regulatory systems in Bifidobacterium infantis by functional complementation and degenerate PCR approaches

scientific article

Identification of universal gut microbial biomarkers of common human intestinal diseases by meta-analysis

scientific article

Impact of gut-associated bifidobacteria and their phages on health: two sides of the same coin?

scientific article published on 2 February 2018

In Vitro Characteristics of Phages to Guide 'Real Life' Phage Therapy Suitability.

scientific article

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum

scientific article published on 14 February 2015

Insights into physiological and genetic mupirocin susceptibility in bifidobacteria

scientific article

Insights into teichoic acid biosynthesis by Bifidobacterium bifidum PRL2010.

scientific article published on 21 August 2015

Insights into the taxonomy, genetics and physiology of bifidobacteria

scientific article

Intertwinement of stress response regulons in Bifidobacterium breve UCC2003 ⬇️

scientific article published on February 11, 2010

Investigating the requirement for calcium during lactococcal phage infection

scientific article

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics

scientific article

Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny

scientific article published on 10 May 2013

Isolation of a Virulent Lactobacillus brevis Phage and Its Application in the Control of Beer Spoilage ⬇️

scientific article published on December 1, 2011

Kefir fermented milk and kefiran promote growth of Bifidobacterium bifidum PRL2010 and modulate its gene expression

article

Klebsiella pneumoniae subsp. pneumoniae-bacteriophage combination from the caecal effluent of a healthy woman

scientific article published on 28 July 2015

Lactobacillus hordei sp. nov., a bacteriocinogenic strain isolated from malted barley

scientific article

Lactobacillus phylogenomics--towards a reclassification of the genus

scientific article published on December 2008

Lactobacillus rossiae, a vitamin B12 producer, represents a metabolically versatile species within the Genus Lactobacillus

scientific article

Lactobacillus rossii sp. nov., isolated from wheat sourdough

scientific article

Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention

scientific article

Lactococcal 949 group phages recognize a carbohydrate receptor on the host cell surface

scientific article published on 6 March 2015

Lactococcus lactis is capable of improving the riboflavin status in deficient rats

scientific article published in August 2005

Lactococcus lactis phage TP901-1 as a model for Siphoviridae virion assembly

scientific article published on 6 January 2016

Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 triggers alternative transcriptional host responses

scientific article published on 31 May 2013

MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation

scientific article

Macrolide resistance mediated by a Bifidobacterium breve membrane protein

scientific article published on October 2005

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

scientific article

Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations

scientific article published on 15 February 2017

Metabolic engineering of lactic acid bacteria for the production of nutraceuticals

scientific article

Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003

scientific article published on 21 October 2010

Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches

scientific article

Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity.

scientific article

Microbial diversity in the human intestine and novel insights from metagenomics

scientific article

Microbiomic analysis of the bifidobacterial population in the human distal gut.

scientific article

Molecular analysis of the replication functions of the bifidobacterial conjugative megaplasmid pMP7017

scientific article published on 03 May 2021

Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009.

scientific article published on November 2004

Molecular characterization of hsp20, encoding a small heat shock protein of bifidobacterium breve UCC2003

scientific article published on 18 May 2007

Molecular characterization of three Lactobacillus delbrueckii subsp. bulgaricus phages

scientific article published on 7 July 2014

Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective

scientific article

Molecular dissection of a bifidobacterial replicon

scientific article

Multireplicon genome architecture of Lactobacillus salivarius

scholarly article

Multivitamin production in Lactococcus lactis using metabolic engineering

scientific article published in April 2004

Next-generation sequencing as an approach to dairy starter selection

scientific article

Novel phage group infecting Lactobacillus delbrueckii subsp. lactis, as revealed by genomic and proteomic analysis of bacteriophage Ldl1.

scientific article published on February 2015

Novel strategies to prevent or exploit phages in fermentations, insights from phage-host interactions

scientific article

Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium

scientific article published on 31 July 2015

Omics of bifidobacteria: research and insights into their health-promoting activities

scientific article

Orally administered bifidobacteria as vehicles for delivery of agents to systemic tumors

scientific article

Phage-Host Interactions of Cheese-Making Lactic Acid Bacteria

scientific article

Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes ⬇️

scientific article published on October 22, 2012

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobac

scientific article published on 26 January 2018

Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status

scientific article

Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides

scientific article published in 2022

Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis

scientific article

Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut.

scientific article

Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators

scientific article published on 6 April 2015

Progress in genomics, metabolism and biotechnology of bifidobacteria ⬇️

scientific article published on January 26, 2011

Progress in lactic acid bacterial phage research

scientific article published on 29 August 2014

Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis

scientific article

Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota

scientific article published on 2 December 2015

Rapid differentiation and in situ detection of 16 sourdough lactobacillus species by multiplex PCR.

scientific article published on June 2005

Revisiting the host adhesion determinants of Streptococcus thermophilus siphophages

scientific article published on 11 June 2020

Riboflavin production in Lactococcus lactis: potential for in situ production of vitamin-enriched foods

scientific article published on October 2004

Ribose utilization by the human commensal Bifidobacterium breve UCC2003

scientific article published on 15 October 2009

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions

scientific article published on 17 June 2013

Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains

scientific article

Selected aspects of the human gut microbiota

scientific article published on 6 October 2017

Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards

scientific article

Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species

scientific article published in August 2006

Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli

scientific article

Sourdough authentication: quantitative PCR to detect the lactic acid bacterial microbiota in breads

scientific article

Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome

scientific article published on 28 September 2016

Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage

scientific article

Stress Physiology of Lactic Acid Bacteria

scientific article

Structural Aspects of the Interaction of Dairy Phages with Their Host Bacteria ⬇️

scientific article published on August 31, 2012

Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1.

scientific article

Structure and Assembly of TP901-1 Virion Unveiled by Mutagenesis.

scientific article published on 6 July 2015

Structure and functional analysis of the host recognition device of lactococcal phage tuc2009.

scientific article published on 22 May 2013

Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism

scientific article

The Atomic Structure of the Phage Tuc2009 Baseplate Tripod Suggests that Host Recognition Involves Two Different Carbohydrate Binding Modules

scientific article published on 26 January 2016

The Baseplate of Lactobacillus delbrueckii Bacteriophage Ld17 Harbors a Glycerophosphodiesterase

scientific article published on 6 June 2016

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

scientific article

The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003.

scientific article

The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon

scientific article published on 20 February 2014

The Lactococcus lactis plasmidome: much learnt, yet still lots to discover

scientific article published on 23 June 2014

The Sortase-Dependent Fimbriome of the Genus Bifidobacterium: Extracellular Structures with Potential To Modulate Microbe-Host Dialogue

scientific article published on 28 July 2017

The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction

scientific article published in September 2005

The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria

scientific article

The essential genomic landscape of the commensal Bifidobacterium breve UCC2003.

scientific article

The genus Lactobacillus--a genomic basis for understanding its diversity

scientific article

The impact of bacteriophage genomics

scientific article published on April 2004

The impact of bacteriophages on probiotic bacteria and gut microbiota diversity

scientific article

The lactococcal phages Tuc2009 and TP901-1 incorporate two alternate forms of their tail fiber into their virions for infection specialization

scientific article published on 8 January 2013

The plasmid complement of Lactococcus lactis UC509.9 encodes multiple bacteriophage resistance systems

scientific article published on 9 May 2014

The riboflavin transporter RibU in Lactococcus lactis: molecular characterization of gene expression and the transport mechanism

scientific article

Towards the diversification of lactococcal starter and non‐starter species in mesophilic dairy culture systems

scientific article published in 2023

Tracking the taxonomy of the genus Bifidobacterium based on a phylogenomic approach

scientific article

Transcriptional analysis of bacteriocin production by malt isolate Lactobacillus sakei 5

scientific article

Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003.

scientific article published on 02 December 2012

Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003.

scientific article

Transcriptomic and morphological profiling of Aspergillus fumigatus Af293 in response to antifungal activity produced by Lactobacillus plantarum 16.

scientific article published on 22 July 2013

Transposon mutagenesis in Bifidobacterium breve: construction and characterization of a Tn5 transposon mutant library for Bifidobacterium breve UCC2003

scientific article

Two membrane proteins from Bifidobacterium breve UCC2003 constitute an ABC-type multidrug transporter

scientific article published in December 2006

Untangling Species-Level Composition of Complex Bacterial Communities through a Novel Metagenomic Approach

scientific article published on 28 July 2020

Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses

scientific article published on 2 October 2017

Viral infection modulation and neutralization by camelid nanobodies

scientific article

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