List of works - Andrew C Doxey

A comparative analysis of cannabis and tobacco smoke exposure on human airway epithelial cell gene expression, immune phenotype, and response to formoterol and budesonide treatment

article

Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production

scientific article

Bioinformatic discovery of a toxin family in Chryseobacterium piperi with sequence similarity to botulinum neurotoxins

scientific article published in Scientific Reports

Botulinum neurotoxin homologs in non-Clostridium species.

scientific article published on 23 December 2014

Cold-active winter rye glucanases with ice-binding capacity.

scientific article published on 30 June 2006

Discovery of a proteolytic flagellin family in diverse bacterial phyla that assembles enzymatically active flagella

scientific article published on 12 September 2017

Discovery of novel bacterial toxins by genomics and computational biology.

scientific article published on 10 February 2018

Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining

scientific article published on 21 May 2019

Functional divergence in the Arabidopsis beta-1,3-glucanase gene family inferred by phylogenetic reconstruction of expression states.

scientific article published in February 2007

Genomic insights into the evolution and ecology of botulinum neurotoxins.

scientific article published on 19 April 2018

High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant

scientific article published on 24 April 2020

Horizontal gene transfer contributed to the evolution of extracellular surface structures: the freshwater polyp Hydra is covered by a complex fibrous cuticle containing glycosaminoglycans and proteins of the PPOD and SWT (sweet tooth) families

scientific article

Identification of a diphtheria toxin-like gene family beyond the Corynebacterium genus

scientific article published on 16 August 2018

Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster

scientific article

MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

scientific article published on 5 November 2015

Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein

scientific article

Novel function discovery through sequence and structural data mining

scientific article

Nuclear targeting of methyl-recycling enzymes in Arabidopsis thaliana is mediated by specific protein interactions

scientific article published on 5 October 2011

Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B

scientific article published on 28 December 2020

Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties

scientific article published on 01 December 2019

Remote homology and the functions of metagenomic dark matter.

scientific article published on 21 July 2015

Slr4, a newly identified S-layer protein from marine Gammaproteobacteria, is a major biofilm matrix component

scientific article published on 17 August 2020

Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d.

scientific article

Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements.

scientific article

Structures of distant diphtheria toxin homologs reveal functional determinants of an evolutionarily conserved toxin scaffold

scientific article published on 19 April 2022

The C. difficile toxin B membrane translocation machinery is an evolutionarily conserved protein delivery apparatus

scientific article published on 23 January 2020

The Skin Microbiome of Cohabiting Couples

scientific article

Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens

scientific article published on 28 April 2020

Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in Sinorhizobium meliloti.

scientific article published on 12 September 2017

mimicMe: a web server for prediction and analysis of host-like proteins in microbial pathogens

scientific article published on 17 October 2014

List of works by Andrew C Doxey

A comparative analysis of cannabis and tobacco smoke exposure on human airway epithelial cell gene expression, immune phenotype, and response to formoterol and budesonide treatment

Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production

Bioinformatic discovery of a toxin family in Chryseobacterium piperi with sequence similarity to botulinum neurotoxins

Botulinum neurotoxin homologs in non-Clostridium species.

Cold-active winter rye glucanases with ice-binding capacity.

Discovery of a proteolytic flagellin family in diverse bacterial phyla that assembles enzymatically active flagella

Discovery of novel bacterial toxins by genomics and computational biology.

Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining

Functional divergence in the Arabidopsis beta-1,3-glucanase gene family inferred by phylogenetic reconstruction of expression states.

Genomic insights into the evolution and ecology of botulinum neurotoxins.

High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant

Horizontal gene transfer contributed to the evolution of extracellular surface structures: the freshwater polyp Hydra is covered by a complex fibrous cuticle containing glycosaminoglycans and proteins of the PPOD and SWT (sweet tooth) families

Identification of a diphtheria toxin-like gene family beyond the Corynebacterium genus

Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster

MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

Modular evolution and the origins of symmetry: reconstruction of a three-fold symmetric globular protein

Novel function discovery through sequence and structural data mining

Nuclear targeting of methyl-recycling enzymes in Arabidopsis thaliana is mediated by specific protein interactions

Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B

Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties

Remote homology and the functions of metagenomic dark matter.

Slr4, a newly identified S-layer protein from marine Gammaproteobacteria, is a major biofilm matrix component

Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d.

Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements.

Structures of distant diphtheria toxin homologs reveal functional determinants of an evolutionarily conserved toxin scaffold

The C. difficile toxin B membrane translocation machinery is an evolutionarily conserved protein delivery apparatus

The Skin Microbiome of Cohabiting Couples

Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens

Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in Sinorhizobium meliloti.

mimicMe: a web server for prediction and analysis of host-like proteins in microbial pathogens