List of works - Yi Xiong

3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.

scientific article

A hadoop-based method to predict potential effective drug combination.

scientific article published on 23 July 2014

A proteomic strategy for global analysis of plant protein complexes

scientific article published on 7 October 2014

An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 ⬇️

scientific article published on 10 December 2019

An accurate feature-based method for identifying DNA-binding residues on protein surfaces.

scientific article published in February 2011

Analysis and classification of DNA-binding sites in single-stranded and double-stranded DNA-binding proteins using protein information.

scientific article published in August 2014

Computational Screening and Analysis of Lung Cancer Related Non-Synonymous Single Nucleotide Polymorphisms on the Human Kirsten Rat Sarcoma Gene

scientific article published on 21 May 2019

Computational prediction of conformational B-cell epitopes from antigen primary structures by ensemble learning

scientific article

Exploiting a reduced set of weighted average features to improve prediction of DNA-binding residues from 3D structures

scientific article

GOLabeler: Improving Sequence-based Large-scale Protein Function Prediction by Learning to Rank

scientific article published on 7 March 2018

Improved Prediction of Michaelis Constants in CYP450-Mediated Reactions by Resilient Back Propagation Algorithm

scientific article published on 01 January 2016

Improved feature-based prediction of SNPs in human cytochrome P450 enzymes.

scientific article published on 21 March 2015

Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0.

scientific article

MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs

scientific article published on 10 June 2020

Mutation probability of cytochrome P450 based on a genetic algorithm and support vector machine ⬇️

scientific article published on July 1, 2011

PDC-SGB: Prediction of effective drug combinations using a stochastic gradient boosting algorithm

scientific article published on 15 January 2017

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology

scientific article published in 2024

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method

scientific article published on 26 October 2018

Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method

scientific article published on 22 October 2019

Prediction of Effective Drug Combinations by an Improved Naïve Bayesian Algorithm

scientific article

Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature ⬇️

scientific article published on August 17, 2011

Prediction of conformational B-cell epitopes.

scientific article published in January 2014

Prediction of heme binding residues from protein sequences with integrative sequence profiles ⬇️

scientific article published on June 21, 2012

Protein-protein interface hot spots prediction based on a hybrid feature selection strategy.

scientific article published on 15 January 2018

PseUI: Pseudouridine sites identification based on RNA sequence information

scientific article published on 29 August 2018

Regulator of Calcineurin 1 Gene Isoform 4, Down-regulated in Hepatocellular Carcinoma, Prevents Proliferation, Migration, and Invasive Activity of Cancer Cells and Metastasis of Orthotopic Tumors by Inhibiting Nuclear Translocation of NFAT1.

scientific article published on 2 June 2017

Survey of Computational Approaches for Prediction of DNA-Binding Residues on Protein Surfaces

scientific article published on 01 January 2018

dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions.

scientific article

List of works by Yi Xiong

3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.

A hadoop-based method to predict potential effective drug combination.

A proteomic strategy for global analysis of plant protein complexes

An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15 ⬇️

An accurate feature-based method for identifying DNA-binding residues on protein surfaces.

Analysis and classification of DNA-binding sites in single-stranded and double-stranded DNA-binding proteins using protein information.

Computational Screening and Analysis of Lung Cancer Related Non-Synonymous Single Nucleotide Polymorphisms on the Human Kirsten Rat Sarcoma Gene

Computational prediction of conformational B-cell epitopes from antigen primary structures by ensemble learning

Exploiting a reduced set of weighted average features to improve prediction of DNA-binding residues from 3D structures

GOLabeler: Improving Sequence-based Large-scale Protein Function Prediction by Learning to Rank

Improved Prediction of Michaelis Constants in CYP450-Mediated Reactions by Resilient Back Propagation Algorithm

Improved feature-based prediction of SNPs in human cytochrome P450 enzymes.

Large-scale binding ligand prediction by improved patch-based method Patch-Surfer2.0.

MLCDForest: multi-label classification with deep forest in disease prediction for long non-coding RNAs

Mutation probability of cytochrome P450 based on a genetic algorithm and support vector machine ⬇️

PDC-SGB: Prediction of effective drug combinations using a stochastic gradient boosting algorithm

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method

Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method

Prediction of Effective Drug Combinations by an Improved Naïve Bayesian Algorithm

Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature ⬇️

Prediction of conformational B-cell epitopes.

Prediction of heme binding residues from protein sequences with integrative sequence profiles ⬇️

Protein-protein interface hot spots prediction based on a hybrid feature selection strategy.

PseUI: Pseudouridine sites identification based on RNA sequence information

Regulator of Calcineurin 1 Gene Isoform 4, Down-regulated in Hepatocellular Carcinoma, Prevents Proliferation, Migration, and Invasive Activity of Cancer Cells and Metastasis of Orthotopic Tumors by Inhibiting Nuclear Translocation of NFAT1.

Survey of Computational Approaches for Prediction of DNA-Binding Residues on Protein Surfaces

dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions.