List of works by Shanker Kalyana-Sundaram

A First-Time-in-Human Study of GSK2636771, a Phosphoinositide 3 Kinase Beta-Selective Inhibitor, in Patients with Advanced Solid Tumors.

scientific article published on 23 June 2017

AGTR1 overexpression defines a subset of breast cancer and confers sensitivity to losartan, an AGTR1 antagonist

scientific article

Activating ESR1 mutations in hormone-resistant metastatic breast cancer

scientific article

Characterization of Gene Expression Phenotype in Amyotrophic Lateral Sclerosis Monocytes.

scientific article published on 24 April 2017

Chimeric transcript discovery by paired-end transcriptome sequencing

scientific article published on 10 July 2009

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer

scientific article

Erratum: Corrigendum: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

scientific article published in Nature

Expressed pseudogenes in the transcriptional landscape of human cancers

scientific article (publication date: 22 June 2012)

Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer

scientific article published on 20 November 2011

Gene Fusion Markup Language: a prototype for exchanging gene fusion data

scientific article

Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer

scientific article

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data

scientific article

Heat Shock Protein Beta-1 Modifies Anterior to Posterior Purkinje Cell Vulnerability in a Mouse Model of Niemann-Pick Type C Disease

scientific article

Humoral response profiling reveals pathways to prostate cancer progression

scientific article published on 11 December 2007

Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing

scientific article

Identification of targetable FGFR gene fusions in diverse cancers.

scientific article

Inflammation-Induced Oxidative Stress Mediates Gene Fusion Formation in Prostate Cancer

scientific article published on December 2016

Integrative molecular concept modeling of prostate cancer progression.

scientific article

Landscape of gene fusions in epithelial cancers: seq and ye shall find

scientific article

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression ⬇️

scientific article

Mining for regulatory programs in the cancer transcriptome

scientific article

Molecular concepts analysis links tumors, pathways, mechanisms, and drugs

scientific article published on May 2007

Non-coding RNA LINC00857 is predictive of poor patient survival and promotes tumor progression via cell cycle regulation in lung cancer

scientific article published on 05 February 2016

Outlier kinase expression by RNA sequencing as targets for precision therapy.

scientific article published on 5 February 2013

Personalized oncology through integrative high-throughput sequencing: a pilot study

scientific article

Primary urethral clear-cell adenocarcinoma: comprehensive analysis by surgical pathology, cytopathology, and next-generation sequencing

scientific article published on 03 January 2014

Probabilistic model of the human protein-protein interaction network

article

Quantitative proteomic profiling of prostate cancer reveals a role for miR-128 in prostate cancer

scientific article

Re: Florian Jentzmik, Carsten Stephan, Kurt Miller, et al. Sarcosine in urine after digital rectal examination fails as a marker in prostate cancer detection and identification of aggressive tumours. Eur Urol 2010;58:12-8.

scientific article published on 18 May 2010

Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma

scientific article

Recurrent reciprocal RNA chimera involving YPEL5 and PPP1CB in chronic lymphocytic leukemia

scientific article published on 4 February 2013

Renal Cell Carcinoma With Chromosome 6p Amplification Including the TFEB Gene: A Novel Mechanism of Tumor Pathogenesis?

scientific article published on 22 December 2016

Renal cell tumors with clear cell histology and intact VHL and chromosome 3p: a histological review of tumors from the Cancer Genome Atlas database

scientific article published on 21 July 2017

SLC45A3-ELK4 chimera in prostate cancer: spotlight on cis-splicing.

scientific article published on July 2012

The tumor suppressor gene rap1GAP is silenced by miR-101-mediated EZH2 overexpression in invasive squamous cell carcinoma

scientific article

Transcriptome meta-analysis of lung cancer reveals recurrent aberrations in NRG1 and Hippo pathway genes

scientific article

Transcriptome sequencing to detect gene fusions in cancer

scientific article

miRConnect 2.0: identification of oncogenic, antagonistic miRNA families in three human cancers

scientific article

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