List of works by Ruth Timme

A Schema for Digitized Surface Swab Site Metadata in Open-Source DNA Sequence Databases

scientific article published in 2023

Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

scientific article

Broad phylogenomic sampling and the sister lineage of land plants

scientific article published in 2012

Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis.

scientific article

Closed Genome Sequences of 28 Foodborne Pathogens from the CFSAN Verification Set, Determined by a Combination of Long and Short Reads

scientific article published on 30 April 2020

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast

scientific article published on 19 December 2013

Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast

scientific article published on 03 April 2014

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product

scientific article published on 2 July 2015

Draft Genome Sequence of a Clostridium botulinum Isolate from Water Used for Cooling at a Plant Producing Low-Acid Canned Foods

scientific article published in January 2013

Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010 to 2013)

scientific article

Draft genome sequences of 21 Salmonella enterica serovar enteritidis strains

scientific article

Draft genome sequences of eight Salmonella enterica serotype newport strains from diverse hosts and locations

scientific article

Erratum: Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

scientific article published in August 2012

First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak

scientific article

Food Safety Genomics and Connections to One Health and the Clinical Microbiology Laboratory

scientific article published on 05 October 2020

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992.

scientific article published on 3 April 2014

Fully assembled genome sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

scientific article published on 21 March 2013

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

scientific article published in 2022

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

scientific article published on 19 November 2020

Genetic Diversity of Salmonella and Listeria Isolates from Food Facilities

scientific article published on 01 December 2018

Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan

scientific article

Genome Sequences of Salmonella enterica Serovar Heidelberg Isolates Isolated in the United States from a Multistate Outbreak of Human Salmonella Infections

scientific article published on 15 January 2013

Genome Sequences of Two Emerging Non-O157 Shiga Toxin-Producing Escherichia coli Strains

scientific article published on 16 May 2013

Genomics of foodborne pathogens for microbial food safety

scientific article

High-resolution phylogeny for Helianthus (Asteraceae) using the 18S-26S ribosomal DNA external transcribed spacer.

scientific article published in November 2007

Identification of Brucella genus and eight Brucella species by Luminex bead-based suspension array.

scientific article

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation

scientific article

Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing

scientific article published on 30 September 2016

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021

Multi-laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria

scientific article published in 2022

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

scientific article published on 9 December 2010

On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004.

scientific article

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

scientific article published on 19 October 2020

Origin of strigolactones in the green lineage.

scientific article published on 27 June 2012

PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES(1).

scientific article

Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing

scientific article published on 10 October 2012

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus from North America Inferred from Whole Genome Sequence Data

scientific article published on 13 November 2020

Phylogenetic networks: modeling, reconstructibility, and accuracy

scientific article published in January 2004

Phylogenomic Pipeline Validation for Foodborne Pathogen Disease Surveillance

scientific article published on 26 April 2019

Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database

scientific article

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

scientific article published on 27 November 2018

Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad

scientific article published on 04 January 2017

The Public Health Impact of a Publically Available, Environmental Database of Microbial Genomes

scientific article

Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

scientific article (publication date: 25 May 2010)

Unraveling the evolution of auxin signaling

scientific article

Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.

scientific article published in August 2004

Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.

scientific article published on 26 May 2017

Whole genome sequencing uses for foodborne contamination and compliance: Discovery of an emerging contamination event in an ice cream facility using whole genome sequencing

scientific article published on 27 April 2019

Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains.

scientific article published on 24 January 2014

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