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List of works by Jingyi Jessica Li

A quantitative proteomic analysis of cellular responses to high glucose media in Chinese hamster ovary cells

scientific article published on 9 April 2015

A statistical simulator scDesign for rational scRNA-seq experimental design

scholarly article published 7 October 2018

AIDE: annotation-assisted isoform discovery with high precision

scientific article published on 06 November 2019

An accurate and robust imputation method scImpute for single-cell RNA-seq data

scientific article published on 8 March 2018

Biclustering of linear patterns in gene expression data

scientific article

Clipper: p-value-free FDR control on high-throughput data from two conditions

scientific article published on 11 October 2021

Comparative analysis of regulatory information and circuits across distant species

scientific article

Comparative analysis of the transcriptome across distant species

scientific article

Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data

scientific article

Comprehensive mapping of mammalian transcriptomes identifies conserved genes associated with different cell differentiation states

article

Correspondence of D. melanogaster and C. elegans developmental stages revealed by alternative splicing characteristics of conserved exons

scientific article

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

scientific article published on 10 December 2012

DORGE: Discovery of Oncogenes and tumoR suppressor genes using Genetic and Epigenetic features

scientific article published on 11 November 2020

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

scientific article published on 23 July 2009

Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states

scientific article published on 11 January 2016

Exaggerated false positives by popular differential expression methods when analyzing human population samples

publication published on 15 March 2022

Gene expression. Statistics requantitates the central dogma

scientific article

Genomic Applications of the Neyman–Pearson Classification Paradigm

Hybrid Statistical and Mechanistic Mathematical Model Guides Mobile Health Intervention for Chronic Pain.

scientific article published on 05 June 2017

Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis.

scientific article published on 16 January 2018

Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states

scientific article

NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data

scientific article

Neyman-Pearson classification algorithms and NP receiver operating characteristics.

scientific article published on 2 February 2018

Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify them

scientific article published on 11 October 2017

Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation

scientific article

Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution

scientific article published on 01 May 2018

Statistics or biology: the zero-inflation controversy about scRNA-seq data

publication published on 21 January 2022

System wide analyses have underestimated protein abundances and the importance of transcription in mammals

scientific article published on 27 February 2014

TRANSCRIPTOME ANALYSIS USING NEXT-GENERATION SEQUENCING

TROM: A Testing-Based Method for Finding Transcriptomic Similarity of Biological Samples ⬇️

scientific article published on 29 August 2016

The concurrence of DNA methylation and demethylation is associated with transcription regulation

scientific article published on 06 September 2021

The interplay between translational efficiency, poly(A) tails, microRNAs, and neuronal activation

scientific article published on 10 March 2022

Understanding patterns and correlates of daily pain using the Sickle cell disease Mobile Application to Record Symptoms via Technology (SMART).

scientific article published on 26 October 2017

Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions

article

mbImpute: an accurate and robust imputation method for microbiome data

scientific article published on 28 June 2021

scImpute: Accurate And Robust Imputation For Single Cell RNA-Seq Data

scholarly article published 24 May 2017

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