List of works - Hao Sun

A Novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network

scientific article

A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma.

scientific article published on 20 August 2012

A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis

scientific article

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks

scientific article published on 01 March 2006

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

scientific article

BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates

scientific article published on 01 April 2022

Cancer genome scanning in plasma: detection of tumor-associated copy number aberrations, single-nucleotide variants, and tumoral heterogeneity by massively parallel sequencing

scientific article published on 11 October 2012

Capturing the interactome of newly transcribed RNA.

scientific article published on 12 February 2018

Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors.

scientific article

ERTargetDB: an integral information resource of transcription regulation of estrogen receptor target genes.

scientific article published on October 2005

Elevated H3K27ac in aged skeletal muscle leads to increase in extracellular matrix and fibrogenic conversion of muscle satellite cells

scientific article published on 20 July 2019

Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization.

scientific article published on 8 January 2009

Genome wide nucleosome mapping for HSV-1 shows nucleosomes are deposited at preferred positions during lytic infection

scientific article published on 24 February 2015

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.

scientific article

Heavy metal speciation and leaching behaviors in cement based solidified/stabilized waste materials.

scientific article published in April 2001

HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.

scientific article published on January 2004

High resolution size analysis of fetal DNA in the urine of pregnant women by paired-end massively parallel sequencing

scientific article

Inhibition of miR-29 by TGF-beta-Smad3 signaling through dual mechanisms promotes transdifferentiation of mouse myoblasts into myofibroblasts

scientific article

Java-based application framework for visualization of gene regulatory region annotations.

scientific article

Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1.

scientific article published on 11 December 2015

Long noncoding RNA SAM promotes myoblast proliferation through stabilizing Sugt1 and facilitating kinetochore assembly

scientific article published on 01 June 2020

Loss of miR-29 in myoblasts contributes to dystrophic muscle pathogenesis

scientific article published on 20 March 2012

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data

scientific article

Maternal Plasma DNA Sequencing Reveals the Genome-Wide Genetic and Mutational Profile of the Fetus

scientific article published on 01 December 2010

Maternal plasma DNA analysis with massively parallel sequencing by ligation for noninvasive prenatal diagnosis of trisomy 21.

scientific article published on 21 December 2009

Maternal plasma RNA sequencing for genome-wide transcriptomic profiling and identification of pregnancy-associated transcripts

scientific article published on 16 April 2014

Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis

scientific article

MicroRNA gene expression during retinoic acid-induced differentiation of human acute promyelocytic leukemia.

scientific article published on 29 January 2007

MyoD induced enhancer RNA interacts with hnRNPL to activate target gene transcription during myogenic differentiation

scientific article published on 19 December 2019

NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes.

scientific article published on 16 April 2007

Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study

scientific article

Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: a transplantation model.

scientific article published on 3 November 2011

Noninvasive Prenatal Diagnosis of Fetal Trisomy 21 by Allelic Ratio Analysis Using Targeted Massively Parallel Sequencing of Maternal Plasma DNA ⬇️

scientific article (publication date: 2012)

Noninvasive Prenatal Diagnosis of a Case of Down Syndrome due to Robertsonian Translocation by Massively Parallel Sequencing of Maternal Plasma DNA

scientific article published on 04 March 2011

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

scientific article

Noninvasive prenatal determination of twin zygosity by maternal plasma DNA analysis.

scientific article

Noninvasive prenatal diagnosis of fetal trisomy 18 and trisomy 13 by maternal plasma DNA sequencing

scientific article (publication date: 2011)

OMGProm: a database of orthologous mammalian gene promoters.

scientific article

PCGF5 is required for neural differentiation of embryonic stem cells.

scientific article

Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing

scientific article

Prediction of pre-miRNA with multiple stem-loops using pruning algorithm

scientific article published on 15 March 2013

SFRS7-mediated splicing of tau exon 10 is directly regulated by STOX1A in glial cells

scientific article published in 2011

SKmDB: an integrated database of next generation sequencing information in skeletal muscle

scientific article published on 01 March 2019

Size-based molecular diagnostics using plasma DNA for noninvasive prenatal testing.

scientific article

Transcriptional pause release is a rate-limiting step for somatic cell reprogramming

scientific article published on 9 October 2014

YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells

scientific article published on 12 April 2019

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

scientific article

lncFunTK: a toolkit for functional annotation of long noncoding RNAs

scientific article published on 01 October 2018

mTFkb: a knowledgebase for fundamental annotation of mouse transcription factors

scientific article published on 08 June 2017

β-Catenin safeguards the ground state of mousepluripotency by strengthening the robustness of the transcriptional apparatus

scientific article published on 17 July 2020

List of works by Hao Sun

A Novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network

A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma.

A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis

AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates

Cancer genome scanning in plasma: detection of tumor-associated copy number aberrations, single-nucleotide variants, and tumoral heterogeneity by massively parallel sequencing

Capturing the interactome of newly transcribed RNA.

Direct activation of human and mouse Oct4 genes using engineered TALE and Cas9 transcription factors.

ERTargetDB: an integral information resource of transcription regulation of estrogen receptor target genes.

Elevated H3K27ac in aged skeletal muscle leads to increase in extracellular matrix and fibrogenic conversion of muscle satellite cells

Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization.

Genome wide nucleosome mapping for HSV-1 shows nucleosomes are deposited at preferred positions during lytic infection

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.

Heavy metal speciation and leaching behaviors in cement based solidified/stabilized waste materials.

HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.

High resolution size analysis of fetal DNA in the urine of pregnant women by paired-end massively parallel sequencing

Inhibition of miR-29 by TGF-beta-Smad3 signaling through dual mechanisms promotes transdifferentiation of mouse myoblasts into myofibroblasts

Java-based application framework for visualization of gene regulatory region annotations.

Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1.

Long noncoding RNA SAM promotes myoblast proliferation through stabilizing Sugt1 and facilitating kinetochore assembly

Loss of miR-29 in myoblasts contributes to dystrophic muscle pathogenesis

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data

Maternal Plasma DNA Sequencing Reveals the Genome-Wide Genetic and Mutational Profile of the Fetus

Maternal plasma DNA analysis with massively parallel sequencing by ligation for noninvasive prenatal diagnosis of trisomy 21.

Maternal plasma RNA sequencing for genome-wide transcriptomic profiling and identification of pregnancy-associated transcripts

Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis

MicroRNA gene expression during retinoic acid-induced differentiation of human acute promyelocytic leukemia.

MyoD induced enhancer RNA interacts with hnRNPL to activate target gene transcription during myogenic differentiation

NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes.

Non-invasive prenatal assessment of trisomy 21 by multiplexed maternal plasma DNA sequencing: large scale validity study

Nonhematopoietically derived DNA is shorter than hematopoietically derived DNA in plasma: a transplantation model.

Noninvasive Prenatal Diagnosis of Fetal Trisomy 21 by Allelic Ratio Analysis Using Targeted Massively Parallel Sequencing of Maternal Plasma DNA ⬇️

Noninvasive Prenatal Diagnosis of a Case of Down Syndrome due to Robertsonian Translocation by Massively Parallel Sequencing of Maternal Plasma DNA

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

Noninvasive prenatal determination of twin zygosity by maternal plasma DNA analysis.

Noninvasive prenatal diagnosis of fetal trisomy 18 and trisomy 13 by maternal plasma DNA sequencing

OMGProm: a database of orthologous mammalian gene promoters.

PCGF5 is required for neural differentiation of embryonic stem cells.

Plasma DNA aberrations in systemic lupus erythematosus revealed by genomic and methylomic sequencing

Prediction of pre-miRNA with multiple stem-loops using pruning algorithm

SFRS7-mediated splicing of tau exon 10 is directly regulated by STOX1A in glial cells

SKmDB: an integrated database of next generation sequencing information in skeletal muscle

Size-based molecular diagnostics using plasma DNA for noninvasive prenatal testing.

Transcriptional pause release is a rate-limiting step for somatic cell reprogramming

YY1 regulates skeletal muscle regeneration through controlling metabolic reprogramming of satellite cells

iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data

lncFunTK: a toolkit for functional annotation of long noncoding RNAs

mTFkb: a knowledgebase for fundamental annotation of mouse transcription factors

β-Catenin safeguards the ground state of mousepluripotency by strengthening the robustness of the transcriptional apparatus