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List of works by Ramon Grima

A continuum approximation to an off-lattice individual-cell based model of cell migration and adhesion

scientific article published on 24 June 2014

A graph-based approach for the approximate solution of the chemical master equation.

scientific article published in October 2013

A study of the accuracy of moment-closure approximations for stochastic chemical kinetics ⬇️

scientific article published on April 21, 2012

A systematic investigation of the rate laws valid in intracellular environments.

scientific article

Accurate discretization of advection-diffusion equations.

scientific article published on 16 September 2004

Analytical approximations for spatial stochastic gene expression in single cells and tissues

scientific article published on May 2016

Anomalous fluctuation scaling laws in stochastic enzyme kinetics: increase of noise strength with the mean concentration

scientific article published on 16 January 2014

Approximate probability distributions of the master equation. ⬇️

scientific article published on 13 July 2015

Arabidopsis cell expansion is controlled by a photothermal switch

scientific article published on 26 September 2014

Breakdown of the reaction-diffusion master equation with nonelementary rates. ⬇️

scientific article published on 19 May 2016

Brownian motion of an asymmetrical particle in a potential field.

scientific article

Can tissue surface tension drive somite formation?

scientific article published on 3 May 2007

Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach

scientific article published on 18 January 2022

Comparison of different moment-closure approximations for stochastic chemical kinetics. ⬇️

scientific article published in November 2015

Construction and accuracy of partial differential equation approximations to the chemical master equation ⬇️

scientific article published on November 23, 2011

Cox process representation and inference for stochastic reaction-diffusion processes ⬇️

scientific article published on 25 May 2016

Crowding-induced anisotropic transport modulates reaction kinetics in nanoscale porous media.

scientific article published in April 2010

DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia

scientific article published in 2022

Directed cell migration in the presence of obstacles.

scientific article published on 16 January 2007

Discreteness-induced concentration inversion in mesoscopic chemical systems.

scientific article published on 10 April 2012

Dynamical phase diagram of an auto-regulating gene in fast switching conditions

scientific article published on 01 May 2020

Effects of bursty protein production on the noisy oscillatory properties of downstream pathways.

scientific article published on January 2013

Efficient Low-Order Approximation of First-Passage Time Distributions.

scientific article published on 20 November 2017

Exact Product Formation Rates for Stochastic Enzyme Kinetics.

scientific article

External contribution to urban air pollution.

scientific article published on February 2002

Fast simulation of Brownian dynamics in a crowded environment.

scientific article published in January 2017

Frequency Domain Analysis of Fluctuations of mRNA and Protein Copy Numbers within a Cell Lineage: Theory and Experimental Validation

scientific article published in 2021

How reaction kinetics with time-dependent rate coefficients differs from generalized mass action

scientific article published on 01 July 2006

How reliable is the linear noise approximation of gene regulatory networks?

scientific article

Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion

scientific article

Insight into nuclear body formation of phytochromes through stochastic modelling and experiment

scientific article published on 18 May 2018

Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansion

scientific article published in 2012

Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments

scientific article

Linear-noise approximation and the chemical master equation agree up to second-order moments for a class of chemical systems ⬇️

scientific article published on 12 October 2015

Macromolecular crowding directs the motion of small molecules inside cells

scientific article published on June 2017

Mathematical models light up plant signaling

scientific article

Mean-field theory accurately captures the variation of copy number distributions across the mRNA life cycle

scientific article published in 2022

Model reduction for stochastic chemical systems with abundant species. ⬇️

scientific article published in December 2015

Modelling noise in biochemical reaction networks

scientific article published on 01 August 2012

Modelling reaction kinetics inside cells

scientific article published on January 2008

Molecular finite-size effects in stochastic models of equilibrium chemical systems ⬇️

scientific article published in February 2016

Molecular noise induces concentration oscillations in chemical systems with stable node steady states ⬇️

scientific article published on February 7, 2013

MomentClosure.jl: automated moment closure approximations in Julia

scientific article published in 2021

Multiscale modeling of biological pattern formation.

scientific article published on January 2008

Noise-induced breakdown of the Michaelis-Menten equation in steady-state conditions.

scientific article published on 29 May 2009

Noise-induced multistability in chemical systems: Discrete versus continuum modeling. ⬇️

scientific article published on 10 April 2015

Phase transitions and superuniversality in the dynamics of a self-driven particle

scientific article published on 31 July 2006

Phenotypic switching in gene regulatory networks

scientific article

Quantitative analysis of low-abundance peptides in HeLa cell cytoplasm by targeted liquid chromatography/mass spectrometry and stable isotope dilution: emphasising the distinction between peptide detection and peptide identification

article

Rigorous elimination of fast stochastic variables from the linear noise approximation using projection operators ⬇️

scientific article published on October 8, 2012

Signatures of nonlinearity in single cell noise-induced oscillations.

scientific article published on 2 July 2013

Single-cell variability in multicellular organisms.

scientific article published on 24 January 2018

Single-molecule enzymology à la Michaelis-Menten

scientific article

Small protein number effects in stochastic models of autoregulated bursty gene expression

scientific article published on 01 February 2020

Spatial Stochastic Intracellular Kinetics: A Review of Modelling Approaches

scientific article published on 21 May 2018

Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf

scientific article

Statistics of Nascent and Mature RNA Fluctuations in a Stochastic Model of Transcriptional Initiation, Elongation, Pausing, and Termination

scientific article published in 2020

Stochastic Simulation of Biomolecular Networks in Dynamic Environments ⬇️

scientific article

Stochastic theory of large-scale enzyme-reaction networks: Finite copy number corrections to rate equation models ⬇️

scientific article published on November 21, 2010

Stochastic time-dependent enzyme kinetics: Closed-form solution and transient bimodality

scientific article published on 01 October 2020

Strong-coupling dynamics of a multicellular chemotactic system.

scientific article published on 15 September 2005

The complex chemical Langevin equation. ⬇️

scientific article published in July 2014

The slow-scale linear noise approximation: an accurate, reduced stochastic description of biochemical networks under timescale separation conditions ⬇️

scientific article published on May 14, 2012

Validity conditions for moment closure approximations in stochastic chemical kinetics. ⬇️

scientific article published in August 2014

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