List of works - An-Suei Yang

Amino acid substitutions of MagA in Klebsiella pneumoniae affect the biosynthesis of the capsular polysaccharide

scientific article

An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.

scientific article published in August 2000

An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence.

scientific article

Analysis of the heat capacity dependence of protein folding

scientific article published on 01 October 1992

Antibody variable domain interface and framework sequence requirements for stability and function by high-throughput experiments.

scientific article

Antibody-drug conjugates with HER2-targeting antibodies from synthetic antibody libraries are highly potent against HER2-positive human gastric tumor in xenograft models

scientific article published on 08 November 2018

Antibodyomics: bioinformatics technologies for understanding B-cell immunity to HIV-1.

scientific article published in January 2017

Characterization of a novel isoform of caspase-9 that inhibits apoptosis

scientific journal article

Design of phage-displayed cystine-stabilized mini-protein libraries for proteinaceous binder engineering.

scientific article

Discovering neutralizing antibodies targeting the stem epitope of H1N1 influenza hemagglutinin with synthetic phage-displayed antibody libraries

scientific article published on 12 October 2015

E339...R416 salt bridge of nucleoprotein as a feasible target for influenza virus inhibitors

scientific article

Effective binding to protein antigens by antibodies from antibody libraries designed with enhanced protein recognition propensities

scientific article published on 09 January 2019

Effects of signal sequence on phage-displayed disulfide-stabilized single chain antibody variable fragment (sc-dsFv) libraries.

scientific article

Electrical potentials in trypsin isozymes

scientific article published on 01 December 1989

Engineering anti-vascular endothelial growth factor single chain disulfide-stabilized antibody variable fragments (sc-dsFv) with phage-displayed sc-dsFv libraries

scientific article

Factor Xa active site substrate specificity with substrate phage display and computational molecular modeling.

scientific article published on 22 February 2008

Free Energy of Amide Hydrogen Bond Formation in Vacuum, in Water, and in Liquid Alkane Solution

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

scientific article

Free energy determinants of secondary structure formation: III. beta-turns and their role in protein folding

scientific article published on 01 June 1996

High throughput cytotoxicity screening of anti-HER2 immunotoxins conjugated with antibody fragments from phage-displayed synthetic antibody libraries

scientific article

Human p16gamma, a novel transcriptional variant of p16(INK4A), coexpresses with p16(INK4A) in cancer cells and inhibits cell-cycle progression.

scientific article published on 7 May 2007

Local structure prediction with local structure-based sequence profiles.

scientific article

Local structure-based sequence profile database for local and global protein structure predictions.

scientific article

Loop-sequence features and stability determinants in antibody variable domains by high-throughput experiments.

scientific article

Modeling protein loops with knowledge-based prediction of sequence-structure alignment.

scientific article

Molecular evolution of cystine-stabilized miniproteins as stable proteinaceous binders

scientific article

On the calculation of pKas in proteins

scientific article published on 01 March 1993

On the pH dependence of protein stability.

scientific article published in May 1993

Origins of specificity and affinity in antibody-protein interactions

scientific article

Population-based study of SR-BI genetic variation and lipid profile.

scientific article

Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms

scientific article

Prediction of FMN-binding residues with three-dimensional probability distributions of interacting atoms on protein surfaces.

scientific article

Prediction of fatty acid-binding residues on protein surfaces with three-dimensional probability distributions of interacting atoms.

scientific article published on 29 May 2014

Predominant structural configuration of natural antibody repertoires enables potent antibody responses against protein antigens

scientific article published on 23 July 2015

Protease substrate site predictors derived from machine learning on multilevel substrate phage display data

scientific article

Protein backbone angle prediction with machine learning approaches.

scientific article

Secondary structure of the human cardiac Na+ channel C terminus: evidence for a role of helical structures in modulation of channel inactivation

scientific article published on 10 December 2001

Sequence to structure alignment in comparative modeling using PrISM

scientific article published on 01 January 1999

Signal sequence as a determinant in expressing disulfide-stabilized single chain antibody variable fragments (sc-dsFv) against human VEGF.

scientific article

Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors

scientific article

Structural origins of pH and ionic strength effects on protein stability. Acid denaturation of sperm whale apomyoglobin

scientific article published on 01 April 1994

Substrate phage display for protease substrate sequence characterization: bovine factor Xa as a model system.

scientific article

Synthesis of tamiflu and its phosphonate congeners possessing potent anti-influenza activity.

scientific article published on 12 September 2007

The Na+ channel inactivation gate is a molecular complex: a novel role of the COOH-terminal domain.

scientific article

Thermal access to amplified chemical potential and the determination of equilibrium constants in protein solutions at subfreezing temperatures.

scientific article

List of works by An-Suei Yang

Amino acid substitutions of MagA in Klebsiella pneumoniae affect the biosynthesis of the capsular polysaccharide

An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.

An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence.

Analysis of the heat capacity dependence of protein folding

Antibody variable domain interface and framework sequence requirements for stability and function by high-throughput experiments.

Antibody-drug conjugates with HER2-targeting antibodies from synthetic antibody libraries are highly potent against HER2-positive human gastric tumor in xenograft models

Antibodyomics: bioinformatics technologies for understanding B-cell immunity to HIV-1.

Characterization of a novel isoform of caspase-9 that inhibits apoptosis

Design of phage-displayed cystine-stabilized mini-protein libraries for proteinaceous binder engineering.

Discovering neutralizing antibodies targeting the stem epitope of H1N1 influenza hemagglutinin with synthetic phage-displayed antibody libraries

E339...R416 salt bridge of nucleoprotein as a feasible target for influenza virus inhibitors

Effective binding to protein antigens by antibodies from antibody libraries designed with enhanced protein recognition propensities

Effects of signal sequence on phage-displayed disulfide-stabilized single chain antibody variable fragment (sc-dsFv) libraries.

Electrical potentials in trypsin isozymes

Engineering anti-vascular endothelial growth factor single chain disulfide-stabilized antibody variable fragments (sc-dsFv) with phage-displayed sc-dsFv libraries

Factor Xa active site substrate specificity with substrate phage display and computational molecular modeling.

Free Energy of Amide Hydrogen Bond Formation in Vacuum, in Water, and in Liquid Alkane Solution

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

Free energy determinants of secondary structure formation: III. beta-turns and their role in protein folding

High throughput cytotoxicity screening of anti-HER2 immunotoxins conjugated with antibody fragments from phage-displayed synthetic antibody libraries

Human p16gamma, a novel transcriptional variant of p16(INK4A), coexpresses with p16(INK4A) in cancer cells and inhibits cell-cycle progression.

Local structure prediction with local structure-based sequence profiles.

Local structure-based sequence profile database for local and global protein structure predictions.

Loop-sequence features and stability determinants in antibody variable domains by high-throughput experiments.

Modeling protein loops with knowledge-based prediction of sequence-structure alignment.

Molecular evolution of cystine-stabilized miniproteins as stable proteinaceous binders

On the calculation of pKas in proteins

On the pH dependence of protein stability.

Origins of specificity and affinity in antibody-protein interactions

Population-based study of SR-BI genetic variation and lipid profile.

Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms

Prediction of FMN-binding residues with three-dimensional probability distributions of interacting atoms on protein surfaces.

Prediction of fatty acid-binding residues on protein surfaces with three-dimensional probability distributions of interacting atoms.

Predominant structural configuration of natural antibody repertoires enables potent antibody responses against protein antigens

Protease substrate site predictors derived from machine learning on multilevel substrate phage display data

Protein backbone angle prediction with machine learning approaches.

Secondary structure of the human cardiac Na+ channel C terminus: evidence for a role of helical structures in modulation of channel inactivation

Sequence to structure alignment in comparative modeling using PrISM

Signal sequence as a determinant in expressing disulfide-stabilized single chain antibody variable fragments (sc-dsFv) against human VEGF.

Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors

Structural origins of pH and ionic strength effects on protein stability. Acid denaturation of sperm whale apomyoglobin

Substrate phage display for protease substrate sequence characterization: bovine factor Xa as a model system.

Synthesis of tamiflu and its phosphonate congeners possessing potent anti-influenza activity.

The Na+ channel inactivation gate is a molecular complex: a novel role of the COOH-terminal domain.

Thermal access to amplified chemical potential and the determination of equilibrium constants in protein solutions at subfreezing temperatures.